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2Q04
Asym. Unit
Info
Asym.Unit (216 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 10 (170 KB)
Biol.Unit 11 (169 KB)
Biol.Unit 2 (39 KB)
Biol.Unit 3 (37 KB)
Biol.Unit 4 (39 KB)
Biol.Unit 5 (39 KB)
Biol.Unit 6 (37 KB)
Biol.Unit 7 (203 KB)
Biol.Unit 8 (135 KB)
Biol.Unit 9 (74 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ACETOIN UTILIZATION PROTEIN (ZP_00540088.1) FROM EXIGUOBACTERIUM SIBIRICUM 255-15 AT 2.33 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
18 May 07 (Deposition) - 12 Jun 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.33
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: A,B,C,D,E,F (1x)
Biol. Unit 8: C,D,E,F (1x)
Biol. Unit 9: A,B (1x)
Biol. Unit 10: A,C,D,E,F (1x)
Biol. Unit 11: B,C,D,E,F (1x)
Keywords
:
Zp_00540088. 1, Acetoin Utilization Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Acetoin Utilization Protein (Zp_00540088. 1) From Exiguobacterium Sibiricum 255-15 At 2. 33 A Resolution
To Be Published
[
close entry info
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Hetero Components
(4, 63)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
1c: ACETIC ACID (ACYc)
1d: ACETIC ACID (ACYd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
4a: SELENOMETHIONINE (MSEa)
4aa: SELENOMETHIONINE (MSEaa)
4ab: SELENOMETHIONINE (MSEab)
4ac: SELENOMETHIONINE (MSEac)
4ad: SELENOMETHIONINE (MSEad)
4ae: SELENOMETHIONINE (MSEae)
4af: SELENOMETHIONINE (MSEaf)
4ag: SELENOMETHIONINE (MSEag)
4ah: SELENOMETHIONINE (MSEah)
4ai: SELENOMETHIONINE (MSEai)
4aj: SELENOMETHIONINE (MSEaj)
4ak: SELENOMETHIONINE (MSEak)
4al: SELENOMETHIONINE (MSEal)
4am: SELENOMETHIONINE (MSEam)
4an: SELENOMETHIONINE (MSEan)
4ao: SELENOMETHIONINE (MSEao)
4ap: SELENOMETHIONINE (MSEap)
4aq: SELENOMETHIONINE (MSEaq)
4ar: SELENOMETHIONINE (MSEar)
4as: SELENOMETHIONINE (MSEas)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
4j: SELENOMETHIONINE (MSEj)
4k: SELENOMETHIONINE (MSEk)
4l: SELENOMETHIONINE (MSEl)
4m: SELENOMETHIONINE (MSEm)
4n: SELENOMETHIONINE (MSEn)
4o: SELENOMETHIONINE (MSEo)
4p: SELENOMETHIONINE (MSEp)
4q: SELENOMETHIONINE (MSEq)
4r: SELENOMETHIONINE (MSEr)
4s: SELENOMETHIONINE (MSEs)
4t: SELENOMETHIONINE (MSEt)
4u: SELENOMETHIONINE (MSEu)
4v: SELENOMETHIONINE (MSEv)
4w: SELENOMETHIONINE (MSEw)
4x: SELENOMETHIONINE (MSEx)
4y: SELENOMETHIONINE (MSEy)
4z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
4
Ligand/Ion
ACETIC ACID
2
CA
7
Ligand/Ion
CALCIUM ION
3
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
4
MSE
45
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR D:133 , HOH D:222 , HOH D:248 , HOH D:249 , HOH D:250
BINDING SITE FOR RESIDUE CA D 211
02
AC2
SOFTWARE
GLY B:98 , THR B:133 , HOH B:226 , HOH B:231 , HOH B:244 , HOH B:255
BINDING SITE FOR RESIDUE CA B 211
03
AC3
SOFTWARE
GLY A:98 , THR A:133 , HOH A:221 , HOH A:232 , HOH A:256
BINDING SITE FOR RESIDUE CA A 211
04
AC4
SOFTWARE
GLY F:98 , THR F:133
BINDING SITE FOR RESIDUE CA F 211
05
AC5
SOFTWARE
GLY C:98 , THR C:133 , HOH C:223 , HOH C:230
BINDING SITE FOR RESIDUE CA C 211
06
AC6
SOFTWARE
SER A:87 , GLY A:89 , GLU B:88
BINDING SITE FOR RESIDUE CA A 212
07
AC7
SOFTWARE
THR E:133 , ACY E:213
BINDING SITE FOR RESIDUE CA E 211
08
AC8
SOFTWARE
ALA A:30 , HIS A:48 , GLU A:49
BINDING SITE FOR RESIDUE EDO A 213
09
AC9
SOFTWARE
ALA A:40 , PHE A:41 , ILE A:100 , GLU A:134 , HIS A:138 , TRP A:139 , TYR A:151 , HOH A:239
BINDING SITE FOR RESIDUE EDO A 214
10
BC1
SOFTWARE
PRO A:168 , THR A:169 , PRO A:178 , ASN A:180 , HOH A:254 , HOH A:259 , TYR C:136
BINDING SITE FOR RESIDUE EDO A 215
11
BC2
SOFTWARE
ASP C:170 , ARG C:205 , ARG C:206 , PHE C:207 , TYR D:136 , TRP D:137
BINDING SITE FOR RESIDUE EDO C 212
12
BC3
SOFTWARE
GLU D:59 , ARG D:61 , TYR D:128
BINDING SITE FOR RESIDUE EDO D 212
13
BC4
SOFTWARE
PRO D:172 , GLU D:173 , SER D:176
BINDING SITE FOR RESIDUE EDO D 213
14
BC5
SOFTWARE
LYS A:33 , LEU A:34 , ALA A:45 , HIS A:48
BINDING SITE FOR RESIDUE ACY A 216
15
BC6
SOFTWARE
GLU E:59 , ARG E:61 , LEU E:95 , TYR E:128
BINDING SITE FOR RESIDUE ACY E 212
16
BC7
SOFTWARE
GLU F:88 , HIS F:197 , ARG F:204
BINDING SITE FOR RESIDUE ACY F 213
17
BC8
SOFTWARE
LEU E:97 , GLY E:98 , THR E:132 , THR E:133 , GLU E:134 , CA E:211 , HOH E:232
BINDING SITE FOR RESIDUE ACY E 213
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2q04F00 (F:5-207)
1b: CATH_2q04B00 (B:2-207)
1c: CATH_2q04C00 (C:2-209)
1d: CATH_2q04D00 (D:0-209)
1e: CATH_2q04E00 (E:0-209)
1f: CATH_2q04A00 (A:0-210)
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(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
[code=3.40.630.30, no name defined]
(126)
Exiguobacterium sibiricum 255-15. Organism_taxid: 262543. Strain: 255-15.
(1)
1a
2q04F00
F:5-207
1b
2q04B00
B:2-207
1c
2q04C00
C:2-209
1d
2q04D00
D:0-209
1e
2q04E00
E:0-209
1f
2q04A00
A:0-210
[
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Acetyltransf_1_2q04F01 (F:65-136)
1b: PFAM_Acetyltransf_1_2q04F02 (F:65-136)
1c: PFAM_Acetyltransf_1_2q04F03 (F:65-136)
1d: PFAM_Acetyltransf_1_2q04F04 (F:65-136)
1e: PFAM_Acetyltransf_1_2q04F05 (F:65-136)
1f: PFAM_Acetyltransf_1_2q04F06 (F:65-136)
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Clan
:
Acetyltrans
(109)
Family
:
Acetyltransf_1
(58)
Exiguobacterium sibiricum (strain DSM 17290 / JCM 13490 / 255-15)
(1)
1a
Acetyltransf_1-2q04F01
F:65-136
1b
Acetyltransf_1-2q04F02
F:65-136
1c
Acetyltransf_1-2q04F03
F:65-136
1d
Acetyltransf_1-2q04F04
F:65-136
1e
Acetyltransf_1-2q04F05
F:65-136
1f
Acetyltransf_1-2q04F06
F:65-136
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