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2PX6
Asym. Unit
Info
Asym.Unit (89 KB)
Biol.Unit 1 (43 KB)
Biol.Unit 2 (44 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE THIOESTERASE DOMAIN OF HUMAN FATTY ACID SYNTHASE INHIBITED BY ORLISTAT
Authors
:
C. W. Pemble Iv, L. C. Johnson, S. J. Kridel, W. T. Lowther
Date
:
14 May 07 (Deposition) - 10 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Thioesaterse Domain, Orlistat, Fatty Acid Synthase, Drug Complex, Tetrahydrolipstatin, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. W. Pemble, L. C. Johnson, S. J. Kridel, W. T. Lowther
Crystal Structure Of The Thioesterase Domain Of Human Fatty Acid Synthase Inhibited By Orlistat.
Nat. Struct. Mol. Biol. V. 14 704 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: (2S,3S,5S)-5-[(N-FORMYL-L-LEUCYL)O... (DH9a)
1b: (2S,3S,5S)-5-[(N-FORMYL-L-LEUCYL)O... (DH9b)
2a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DH9
2
Ligand/Ion
(2S,3S,5S)-5-[(N-FORMYL-L-LEUCYL)OXY]-2-HEXYL-3-HYDROXYHEXADECANOIC ACID
2
DTT
1
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
[
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:2222 , PRO A:2249 , ILE A:2250 , GLU A:2251 , SER A:2308 , TYR A:2309 , TYR A:2343 , ALA A:2363 , PHE A:2370 , PHE A:2423 , HIS A:2481 , ARG A:2482
BINDING SITE FOR RESIDUE DH9 A 3000
2
AC2
SOFTWARE
HOH B:5 , SER B:2308 , TYR B:2309 , TYR B:2343 , ALA B:2363 , PHE B:2370 , GLN B:2374 , PHE B:2423 , GLU B:2431
BINDING SITE FOR RESIDUE DH9 B 61
3
AC3
SOFTWARE
LEU A:2279 , ASP A:2280 , SER A:2422 , TYR A:2425 , SER B:2281 , HIS B:2283 , SER B:2284 , ALA B:2287
BINDING SITE FOR RESIDUE DTT B 71
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(5, 10)
Info
All Exons
Exon 1.39 (A:2221-2276 | B:2221-2276)
Exon 1.40 (A:2276-2343 (gaps) | B:2276-2343)
Exon 1.41 (A:2361-2382 | B:2360-2382)
Exon 1.42 (A:2383-2466 (gaps) | B:2383-2466 (...)
Exon 1.43 (A:2467-2501 | B:2467-2507)
View:
Select:
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All Exon Boundaries
1: Boundary 1.38/1.39
2: Boundary 1.39/1.40
3: Boundary 1.40/1.41
4: Boundary 1.41/1.42
5: Boundary 1.42/1.43
6: Boundary 1.43/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000306749
1
ENSE00001379760
chr17:
80056106-80055997
110
FAS_HUMAN
-
0
0
-
-
1.2
ENST00000306749
2
ENSE00001188368
chr17:
80054328-80054195
134
FAS_HUMAN
1-43
43
0
-
-
1.3
ENST00000306749
3
ENSE00001163495
chr17:
80053348-80053196
153
FAS_HUMAN
43-94
52
0
-
-
1.4
ENST00000306749
4
ENSE00001163489
chr17:
80051647-80051474
174
FAS_HUMAN
94-152
59
0
-
-
1.5
ENST00000306749
5
ENSE00001163482
chr17:
80051295-80051095
201
FAS_HUMAN
152-219
68
0
-
-
1.6
ENST00000306749
6
ENSE00001163474
chr17:
80050895-80050773
123
FAS_HUMAN
219-260
42
0
-
-
1.7
ENST00000306749
7
ENSE00001163463
chr17:
80050688-80050573
116
FAS_HUMAN
260-298
39
0
-
-
1.8
ENST00000306749
8
ENSE00001163453
chr17:
80050465-80050331
135
FAS_HUMAN
299-343
45
0
-
-
1.9
ENST00000306749
9
ENSE00001163444
chr17:
80049560-80049098
463
FAS_HUMAN
344-498
155
0
-
-
1.10
ENST00000306749
10
ENSE00001163437
chr17:
80048945-80048758
188
FAS_HUMAN
498-560
63
0
-
-
1.11
ENST00000306749
11
ENSE00001163429
chr17:
80048440-80048251
190
FAS_HUMAN
561-624
64
0
-
-
1.12
ENST00000306749
12
ENSE00001163421
chr17:
80047602-80047508
95
FAS_HUMAN
624-655
32
0
-
-
1.13
ENST00000306749
13
ENSE00001163412
chr17:
80047260-80047126
135
FAS_HUMAN
656-700
45
0
-
-
1.14
ENST00000306749
14
ENSE00001163403
chr17:
80047048-80046845
204
FAS_HUMAN
701-768
68
0
-
-
1.15
ENST00000306749
15
ENSE00001163393
chr17:
80046752-80046637
116
FAS_HUMAN
769-807
39
0
-
-
1.16
ENST00000306749
16
ENSE00001163385
chr17:
80046438-80046266
173
FAS_HUMAN
807-865
59
0
-
-
1.17
ENST00000306749
17
ENSE00001163378
chr17:
80046183-80045992
192
FAS_HUMAN
865-929
65
0
-
-
1.18
ENST00000306749
18
ENSE00001163370
chr17:
80045910-80045830
81
FAS_HUMAN
929-956
28
0
-
-
1.19
ENST00000306749
19
ENSE00001163364
chr17:
80045737-80045561
177
FAS_HUMAN
956-1015
60
0
-
-
1.20
ENST00000306749
20
ENSE00001163353
chr17:
80045380-80045201
180
FAS_HUMAN
1015-1075
61
0
-
-
1.21
ENST00000306749
21
ENSE00001163343
chr17:
80045129-80044926
204
FAS_HUMAN
1075-1143
69
0
-
-
1.22
ENST00000306749
22
ENSE00001163338
chr17:
80044434-80044130
305
FAS_HUMAN
1143-1244
102
0
-
-
1.23
ENST00000306749
23
ENSE00001163334
chr17:
80043747-80043358
390
FAS_HUMAN
1245-1374
130
0
-
-
1.24
ENST00000306749
24
ENSE00001163328
chr17:
80043278-80043114
165
FAS_HUMAN
1375-1429
55
0
-
-
1.25
ENST00000306749
25
ENSE00001163322
chr17:
80043032-80042911
122
FAS_HUMAN
1430-1470
41
0
-
-
1.26
ENST00000306749
26
ENSE00001163317
chr17:
80042829-80042675
155
FAS_HUMAN
1470-1522
53
0
-
-
1.27
ENST00000306749
27
ENSE00001163312
chr17:
80042592-80042389
204
FAS_HUMAN
1522-1590
69
0
-
-
1.28
ENST00000306749
28
ENSE00001163306
chr17:
80042260-80042110
151
FAS_HUMAN
1590-1640
51
0
-
-
1.29
ENST00000306749
29
ENSE00001163299
chr17:
80042029-80041851
179
FAS_HUMAN
1640-1700
61
0
-
-
1.30
ENST00000306749
30
ENSE00001163293
chr17:
80041767-80041648
120
FAS_HUMAN
1700-1740
41
0
-
-
1.31
ENST00000306749
31
ENSE00001163286
chr17:
80041515-80041393
123
FAS_HUMAN
1740-1781
42
0
-
-
1.32
ENST00000306749
32
ENSE00001163279
chr17:
80041301-80041078
224
FAS_HUMAN
1781-1855
75
0
-
-
1.33
ENST00000306749
33
ENSE00001163273
chr17:
80040991-80040790
202
FAS_HUMAN
1856-1923
68
0
-
-
1.34
ENST00000306749
34
ENSE00001163268
chr17:
80040554-80040403
152
FAS_HUMAN
1923-1973
51
0
-
-
1.35
ENST00000306749
35
ENSE00001163265
chr17:
80040290-80040199
92
FAS_HUMAN
1974-2004
31
0
-
-
1.36
ENST00000306749
36
ENSE00001163260
chr17:
80040036-80039885
152
FAS_HUMAN
2004-2055
52
0
-
-
1.37
ENST00000306749
37
ENSE00001163254
chr17:
80039719-80039477
243
FAS_HUMAN
2055-2136
82
0
-
-
1.38
ENST00000306749
38
ENSE00001188261
chr17:
80039228-80039040
189
FAS_HUMAN
2136-2199
64
0
-
-
1.39
ENST00000306749
39
ENSE00001163246
chr17:
80038798-80038568
231
FAS_HUMAN
2199-2276
78
2
A:2221-2276
B:2221-2276
56
56
1.40
ENST00000306749
40
ENSE00001188253
chr17:
80038466-80038246
221
FAS_HUMAN
2276-2349
74
2
A:2276-2343 (gaps)
B:2276-2343
68
68
1.41
ENST00000306749
41
ENSE00001155362
chr17:
80038114-80038016
99
FAS_HUMAN
2350-2382
33
2
A:2361-2382
B:2360-2382
22
23
1.42
ENST00000306749
42
ENSE00001163220
chr17:
80037484-80037233
252
FAS_HUMAN
2383-2466
84
2
A:2383-2466 (gaps)
B:2383-2466 (gaps)
84
84
1.43
ENST00000306749
43
ENSE00001321585
chr17:
80037156-80036215
942
FAS_HUMAN
2467-2511
45
2
A:2467-2501
B:2467-2507
35
41
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2px6B01 (B:2221-2343,B:2433-2507)
1b: CATH_2px6A01 (A:2221-2342,A:2433-2501)
2a: CATH_2px6A02 (A:2343-2432)
2b: CATH_2px6B02 (B:2360-2432)
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(
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1820, no name defined]
(692)
Human (Homo sapiens)
(118)
1a
2px6B01
B:2221-2343,B:2433-2507
1b
2px6A01
A:2221-2342,A:2433-2501
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Protein Yjbj; Chain: A;
(4)
Homologous Superfamily
:
Fatty acid synthase; domain 2
(2)
Human (Homo sapiens)
(2)
2a
2px6A02
A:2343-2432
2b
2px6B02
B:2360-2432
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Thioesterase_2px6B01 (B:2242-2501)
1b: PFAM_Thioesterase_2px6B02 (B:2242-2501)
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Clans
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Families
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)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Thioesterase
(7)
Homo sapiens (Human)
(1)
1a
Thioesterase-2px6B01
B:2242-2501
1b
Thioesterase-2px6B02
B:2242-2501
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