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Asym. Unit
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Asym.Unit (247 KB)
Biol.Unit 1 (240 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF ISOMERASE DOMAIN OF GLUCOSAMINE-6-PHOSPHATE SYNTHASE FROM CANDIDA ALBICANS
Authors
:
J. Raczynska, J. Olchowy, S. Milewski, W. Rypniewski
Date
:
09 May 07 (Deposition) - 11 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Glucosamine-6-Phosphate Synthase; Aldose/Ketose Isomerase; Crystal Structure; Rossmann-Like Fold; , Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Raczynska, J. Olchowy, P. V. Konariev, D. I. Svergun, S. Milewski, W. Rypniewski
The Crystal And Solution Studies Of Glucosamine-6-Phosphate Synthase From Candida Albicans
J. Mol. Biol. V. 372 672 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 14)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: FRUCTOSE -6-PHOSPHATE (F6Ra)
2b: FRUCTOSE -6-PHOSPHATE (F6Rb)
2c: FRUCTOSE -6-PHOSPHATE (F6Rc)
2d: FRUCTOSE -6-PHOSPHATE (F6Rd)
3a: SODIUM ION (NAa)
3b: SODIUM ION (NAb)
3c: SODIUM ION (NAc)
3d: SODIUM ION (NAd)
4a: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1a)
4b: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1b)
4c: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1c)
4d: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
F6R
4
Ligand/Ion
FRUCTOSE -6-PHOSPHATE
3
NA
4
Ligand/Ion
SODIUM ION
4
UD1
4
Ligand/Ion
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
[
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]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:590 , HOH A:5163 , HOH A:5703 , VAL B:600 , LEU B:605 , GLY B:608 , ILE B:609
BINDING SITE FOR RESIDUE ACT A 713
02
AC2
SOFTWARE
SER A:484 , ARG A:485 , THR A:487 , UD1 A:5002 , HOH A:5011 , HOH A:5012
BINDING SITE FOR RESIDUE NA A 5001
03
AC3
SOFTWARE
SER B:484 , ARG B:485 , THR B:487 , UD1 B:5003 , HOH B:5008 , HOH B:5009
BINDING SITE FOR RESIDUE NA B 5002
04
AC4
SOFTWARE
LEU C:605 , GLY C:608 , ILE C:609 , HOH C:5478 , HOH C:5481 , LYS D:590
BINDING SITE FOR RESIDUE ACT C 713
05
AC5
SOFTWARE
SER C:484 , ARG C:485 , THR C:487 , UD1 C:5004 , HOH C:5010 , HOH C:5752
BINDING SITE FOR RESIDUE NA C 5003
06
AC6
SOFTWARE
SER D:484 , ARG D:485 , THR D:487 , UD1 D:5005
BINDING SITE FOR RESIDUE NA D 5004
07
AC7
SOFTWARE
ARG A:372 , GLY A:383 , GLY A:384 , GLY A:474 , VAL A:476 , SER A:484 , THR A:487 , CYS A:489 , GLY A:490 , VAL A:491 , HIS A:492 , NA A:5001 , HOH A:5143 , HOH A:5144 , HOH A:5250 , HOH A:5662 , HOH A:5663 , HOH A:5698 , HOH A:5723
BINDING SITE FOR RESIDUE UD1 A 5002
08
AC8
SOFTWARE
CYS A:403 , GLY A:404 , THR A:405 , SER A:406 , SER A:450 , GLN A:451 , SER A:452 , THR A:455 , ALA A:502 , SER A:503 , LYS A:588 , GLU A:591 , HOH A:5036 , HOH A:5037 , HOH A:5198 , HOH A:5245 , HOH A:5630
BINDING SITE FOR RESIDUE F6R A 5003
09
AC9
SOFTWARE
ARG B:372 , GLY B:383 , GLY B:384 , GLY B:474 , VAL B:476 , VAL B:479 , SER B:484 , THR B:487 , CYS B:489 , GLY B:490 , VAL B:491 , HIS B:492 , NA B:5002 , HOH B:5021 , HOH B:5022 , HOH B:5336 , HOH B:5337 , HOH B:5350
BINDING SITE FOR RESIDUE UD1 B 5003
10
BC1
SOFTWARE
CYS B:403 , GLY B:404 , THR B:405 , SER B:406 , SER B:450 , GLN B:451 , SER B:452 , THR B:455 , ALA B:502 , SER B:503 , LYS B:588 , GLU B:591 , HOH B:5157 , HOH B:5158 , HOH B:5345 , HOH B:5618 , HOH B:5702
BINDING SITE FOR RESIDUE F6R B 5004
11
BC2
SOFTWARE
ARG C:372 , GLY C:383 , GLY C:384 , GLY C:474 , VAL C:476 , SER C:484 , THR C:487 , CYS C:489 , GLY C:490 , VAL C:491 , HIS C:492 , NA C:5003 , HOH C:5018 , HOH C:5186 , HOH C:5281 , HOH C:5282 , HOH C:5283 , HOH C:5408 , HOH C:5423 , HOH C:5428 , HOH C:5429
BINDING SITE FOR RESIDUE UD1 C 5004
12
BC3
SOFTWARE
CYS C:403 , THR C:405 , SER C:406 , SER C:450 , GLN C:451 , SER C:452 , THR C:455 , ALA C:502 , SER C:503 , LYS C:588 , GLU C:591 , HOH C:5111 , HOH C:5204 , HOH C:5388 , HOH C:5673
BINDING SITE FOR RESIDUE F6R C 5005
13
BC4
SOFTWARE
ARG D:372 , GLY D:383 , GLY D:384 , GLY D:474 , VAL D:476 , SER D:484 , THR D:487 , CYS D:489 , GLY D:490 , VAL D:491 , HIS D:492 , NA D:5004 , HOH D:5011 , HOH D:5013 , HOH D:5014 , HOH D:5047 , HOH D:5125 , HOH D:5157
BINDING SITE FOR RESIDUE UD1 D 5005
14
BC5
SOFTWARE
CYS D:403 , GLY D:404 , THR D:405 , SER D:406 , SER D:450 , GLN D:451 , SER D:452 , THR D:455 , ALA D:502 , SER D:503 , LYS D:588 , GLU D:591 , HOH D:5021 , HOH D:5023 , HOH D:5105 , HOH D:5156 , HOH D:5174
BINDING SITE FOR RESIDUE F6R D 5006
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: SIS (A:388-527,B:388-527,C:388-527,D:38...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SIS
PS51464
SIS domain profile.
GFA1_CANAL
389-528
561-703
8
A:388-527
B:388-527
C:388-527
D:388-527
A:560-700
B:560-700
C:560-700
D:560-700
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2puta_ (A:)
1b: SCOP_d2putb_ (B:)
1c: SCOP_d2putc_ (C:)
1d: SCOP_d2putd_ (D:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
SIS domain
(85)
Superfamily
:
SIS domain
(85)
Family
:
automated matches
(22)
Protein domain
:
automated matches
(22)
Candida albicans [TaxId: 237561]
(4)
1a
d2puta_
A:
1b
d2putb_
B:
1c
d2putc_
C:
1d
d2putd_
D:
[
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_SIS_2putD01 (D:563-695)
1b: PFAM_SIS_2putD02 (D:563-695)
1c: PFAM_SIS_2putD03 (D:563-695)
1d: PFAM_SIS_2putD04 (D:563-695)
1e: PFAM_SIS_2putD05 (D:563-695)
1f: PFAM_SIS_2putD06 (D:563-695)
1g: PFAM_SIS_2putD07 (D:563-695)
1h: PFAM_SIS_2putD08 (D:563-695)
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Clan
:
SIS
(53)
Family
:
SIS
(23)
Candida albicans (Yeast)
(4)
1a
SIS-2putD01
D:563-695
1b
SIS-2putD02
D:563-695
1c
SIS-2putD03
D:563-695
1d
SIS-2putD04
D:563-695
1e
SIS-2putD05
D:563-695
1f
SIS-2putD06
D:563-695
1g
SIS-2putD07
D:563-695
1h
SIS-2putD08
D:563-695
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Asymmetric Unit 1
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