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2PQA
Asym. Unit
Info
Asym.Unit (83 KB)
Biol.Unit 1 (40 KB)
Biol.Unit 2 (40 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF FULL-LENGTH HUMAN RPA 14/32 HETERODIMER
Authors
:
X. Deng, G. E. Borgstahl
Date
:
01 May 07 (Deposition) - 13 Nov 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Rpa14/32; Ssdna Binding Protein; Ob-Fold, Replication
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
X. Deng, J. E. Habel, V. Kabaleeswaran, E. H. Snell, M. S. Wold, G. E. Borgstahl
Structure Of The Full-Length Human Rpa14/32 Complex Gives Insights Into The Mechanism Of Dna Binding And Complex Formation.
J. Mol. Biol. V. 374 865 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(8, 16)
Info
All Exons
Exon 1.2 (A:42-73 | C:44-73)
Exon 1.3 (A:74-111 | C:74-111)
Exon 1.4 (A:112-136 (gaps) | C:112-136)
Exon 1.5a (A:137-172 | C:137-170)
Exon 2.5f (B:3-33 | D:4-33)
Exon 2.7a (B:34-58 | D:34-58)
Exon 2.8b (B:59-95 | D:59-95)
Exon 2.9c (B:95-116 | D:95-117)
View:
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All Exon Boundaries
01: Boundary 1.1e/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5a
05: Boundary 1.5a/1.6
06: Boundary 2.5b/2.5f
07: Boundary 2.5f/2.7a
08: Boundary 2.7a/2.8b
09: Boundary 2.8b/2.9c
10: Boundary 2.9c/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000373912
1b
ENSE00001461906
chr1:
28241254-28240945
310
RFA2_HUMAN
1-4
4
0
-
-
1.1e
ENST00000373912
1e
ENSE00001065438
chr1:
28240680-28240574
107
RFA2_HUMAN
4-39
36
0
-
-
1.2
ENST00000373912
2
ENSE00000956216
chr1:
28233793-28233692
102
RFA2_HUMAN
40-73
34
2
A:42-73
C:44-73
32
30
1.3
ENST00000373912
3
ENSE00000956217
chr1:
28233552-28233439
114
RFA2_HUMAN
74-111
38
2
A:74-111
C:74-111
38
38
1.4
ENST00000373912
4
ENSE00000761795
chr1:
28224218-28224144
75
RFA2_HUMAN
112-136
25
2
A:112-136 (gaps)
C:112-136
25
25
1.5a
ENST00000373912
5a
ENSE00002168322
chr1:
28223632-28223516
117
RFA2_HUMAN
137-175
39
2
A:137-172
C:137-170
36
34
1.6
ENST00000373912
6
ENSE00000761799
chr1:
28220908-28220801
108
RFA2_HUMAN
176-211
36
0
-
-
1.7
ENST00000373912
7
ENSE00000761801
chr1:
28220617-28220523
95
RFA2_HUMAN
212-243
32
0
-
-
1.8d
ENST00000373912
8d
ENSE00001461899
chr1:
28218758-28218035
724
RFA2_HUMAN
243-270
28
0
-
-
2.5b
ENST00000396682
5b
ENSE00001554412
chr7:
7680603-7680354
250
RFA3_HUMAN
-
0
0
-
-
2.5f
ENST00000396682
5f
ENSE00001553901
chr7:
7680212-7679951
262
RFA3_HUMAN
1-33
33
2
B:3-33
D:4-33
31
30
2.7a
ENST00000396682
7a
ENSE00001798953
chr7:
7678775-7678701
75
RFA3_HUMAN
34-58
25
2
B:34-58
D:34-58
25
25
2.8b
ENST00000396682
8b
ENSE00000671279
chr7:
7677603-7677495
109
RFA3_HUMAN
59-95
37
2
B:59-95
D:59-95
37
37
2.9c
ENST00000396682
9c
ENSE00001525919
chr7:
7676713-7676563
151
RFA3_HUMAN
95-121
27
2
B:95-116
D:95-117
22
23
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2pqab_ (B:)
1b: SCOP_d2pqad_ (D:)
2a: SCOP_d2pqaa_ (A:)
2b: SCOP_d2pqac_ (C:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Single strand DNA-binding domain, SSB
(96)
Protein domain
:
automated matches
(30)
Human (Homo sapiens) [TaxId: 9606]
(19)
1a
d2pqab_
B:
1b
d2pqad_
D:
Protein domain
:
Replication protein A 32 KDa subunit (RPA32) fragment
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
2a
d2pqaa_
A:
2b
d2pqac_
C:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2pqaB00 (B:3-116)
1b: CATH_2pqaC00 (C:44-170)
1c: CATH_2pqaA00 (A:42-172)
1d: CATH_2pqaD00 (D:4-117)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Human (Homo sapiens)
(27)
1a
2pqaB00
B:3-116
1b
2pqaC00
C:44-170
1c
2pqaA00
A:42-172
1d
2pqaD00
D:4-117
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_RPA_C_2pqaC01 (C:166-170)
1b: PFAM_RPA_C_2pqaC02 (C:166-170)
2a: PFAM_Rep_fac_A_3_2pqaD01 (D:5-113)
2b: PFAM_Rep_fac_A_3_2pqaD02 (D:5-113)
3a: PFAM_tRNA_anti_2pqaC03 (C:74-149)
3b: PFAM_tRNA_anti_2pqaC04 (C:74-149)
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Clan
:
HTH
(544)
Family
:
RPA_C
(7)
Homo sapiens (Human)
(7)
1a
RPA_C-2pqaC01
C:166-170
1b
RPA_C-2pqaC02
C:166-170
Clan
:
OB
(224)
Family
:
Rep_fac-A_3
(6)
Homo sapiens (Human)
(6)
2a
Rep_fac-A_3-2pqaD01
D:5-113
2b
Rep_fac-A_3-2pqaD02
D:5-113
Family
:
tRNA_anti
(18)
Homo sapiens (Human)
(7)
3a
tRNA_anti-2pqaC03
C:74-149
3b
tRNA_anti-2pqaC04
C:74-149
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