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Asym.Unit (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PDZ DOMAIN OF HUMAN GRASP (GRP1) IN COMPLEX WITH THE C-TERMINAL PEPTIDE OF THE METABOTROPIC GLUTAMATE RECEPTOR TYPE 1
Authors
:
J. Elkins, E. Papagrigoriou, C. Cooper, C. Gileadi, J. Uppenberg, J. Bray, F. Von Delft, A. C. W. Pike, E. Ugochukwu, C. Umeano, O. Gileadi, A. Edwards, C. H. Arrowsmith, J. Weigelt, M. Sundstrom, D. A. Doyle, Structural Genomics Consortium (Sgc)
Date
:
25 Apr 07 (Deposition) - 08 May 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Scaffold Protein, Structural Genomics, Structural Genomics Consortium, Sgc, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Elkins, E. Papagrigoriou, C. Cooper, C. Gileadi, J. Uppenberg, J. Bray, F. Von Delft, A. C. W. Pike, E. Ugochukwu, C. Umeano, O. Gileadi, A. Edwards, C. H. Arrowsmith, J. Weigelt, M. Sundstrom, D. A. Doyle, Structural Genomics Consortium (Sgc)
Crystal Structure Of The Pdz Domain Of Human Grasp (Grp1) In Complex With The C-Terminal Peptide Of The Metabotropic Glutamate Receptor Type 1.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:82 , LYS A:176 , HOH B:19 , THR B:191
BINDING SITE FOR RESIDUE CL A 1
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:101-188,B:101-188)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
GRASP_HUMAN
101-190
2
A:101-188
B:101-188
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Exons
(5, 10)
Info
All Exons
Exon 1.2 (A:97-99 | B:98-99)
Exon 1.3 (A:99-117 | B:99-117)
Exon 1.4 (A:118-152 (gaps) | B:118-152)
Exon 1.6 (A:152-183 | B:152-183)
Exon 1.7 (A:183-192 | B:183-192)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000293662
1
ENSE00001328100
chr12:
52400724-52401049
326
GRASP_HUMAN
1-82
82
0
-
-
1.2
ENST00000293662
2
ENSE00001060706
chr12:
52402974-52403023
50
GRASP_HUMAN
83-99
17
2
A:97-99
B:98-99
3
2
1.3
ENST00000293662
3
ENSE00001060705
chr12:
52404665-52404719
55
GRASP_HUMAN
99-117
19
2
A:99-117
B:99-117
19
19
1.4
ENST00000293662
4
ENSE00001060708
chr12:
52404823-52404925
103
GRASP_HUMAN
118-152
35
2
A:118-152 (gaps)
B:118-152
35
35
1.6
ENST00000293662
6
ENSE00001060701
chr12:
52407471-52407564
94
GRASP_HUMAN
152-183
32
2
A:152-183
B:152-183
32
32
1.7
ENST00000293662
7
ENSE00001060700
chr12:
52407661-52407727
67
GRASP_HUMAN
183-205
23
2
A:183-192
B:183-192
10
10
1.8
ENST00000293662
8
ENSE00001060698
chr12:
52407919-52407985
67
GRASP_HUMAN
206-228
23
0
-
-
1.9
ENST00000293662
9
ENSE00001483521
chr12:
52408478-52409648
1171
GRASP_HUMAN
228-395
168
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2pnta_ (A:)
1b: SCOP_d2pntb_ (B:)
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Class
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All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
automated matches
(94)
Protein domain
:
automated matches
(94)
Human (Homo sapiens) [TaxId: 9606]
(71)
1a
d2pnta_
A:
1b
d2pntb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PDZ_2pntB01 (B:101-187)
1b: PFAM_PDZ_2pntB02 (B:101-187)
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Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Homo sapiens (Human)
(96)
1a
PDZ-2pntB01
B:101-187
1b
PDZ-2pntB02
B:101-187
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