PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2PMT
Biol. Unit 1
Info
Asym.Unit (134 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (66 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
GLUTATHIONE TRANSFERASE FROM PROTEUS MIRABILIS
Authors
:
J. Rossjohn, G. Polekhina, S. C. Feil, N. Allocati, M. Masulli, C. Diili M. W. Parker
Date
:
28 Apr 98 (Deposition) - 27 Apr 99 (Release) - 18 Jan 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Transferase, Glutathione-Conjugating, A Putative Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Rossjohn, G. Polekhina, S. C. Feil, N. Allocati, M. Masulli, C. De Illio, M. W. Parker
A Mixed Disulfide Bond In Bacterial Glutathione Transferase Functional And Evolutionary Implications.
Structure V. 6 721 1998
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: GLUTATHIONE (GSHa)
1b: GLUTATHIONE (GSHb)
1c: GLUTATHIONE (GSHc)
1d: GLUTATHIONE (GSHd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GSH
2
Ligand/Ion
GLUTATHIONE
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:9 , CYS A:10 , LYS A:35 , GLY A:50 , GLN A:51 , VAL A:52 , GLU A:65 , GLY A:66 , HIS A:106 , LYS A:107 , ASN B:99 , SER B:103 , GLU B:104
BINDING SITE FOR RESIDUE GSH A 204
2
AC2
SOFTWARE
ASN A:99 , SER A:103 , GLU A:104 , SER B:9 , CYS B:10 , LYS B:35 , GLY B:50 , GLN B:51 , VAL B:52 , GLU B:65 , GLY B:66 , HIS B:106 , LYS B:107
BINDING SITE FOR RESIDUE GSH B 204
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: GST_NTER (A:1-81,B:1-81)
2: GST_CTER (A:87-201,B:87-201)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GST_NTER
PS50404
Soluble glutathione S-transferase N-terminal domain profile.
GST_PROMI
1-81
2
A:1-81
B:1-81
-
-
2
GST_CTER
PS50405
Soluble glutathione S-transferase C-terminal domain profile.
GST_PROMI
87-203
2
A:87-201
B:87-201
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2pmta1 (A:81-201)
1b: SCOP_d2pmtb1 (B:81-201)
1c: SCOP_d2pmtc1 (C:81-201)
1d: SCOP_d2pmtd1 (D:81-201)
2a: SCOP_d2pmta2 (A:1-80)
2b: SCOP_d2pmtb2 (B:1-80)
2c: SCOP_d2pmtc2 (C:1-80)
2d: SCOP_d2pmtd2 (D:1-80)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
Glutathione S-transferase (GST), C-terminal domain
(263)
Protein domain
:
Class beta GST
(8)
Proteus mirabilis [TaxId: 584]
(2)
1a
d2pmta1
A:81-201
1b
d2pmtb1
B:81-201
1c
d2pmtc1
C:81-201
1d
d2pmtd1
D:81-201
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
Glutathione S-transferase (GST), N-terminal domain
(216)
Protein domain
:
Class beta GST
(8)
Proteus mirabilis [TaxId: 584]
(2)
2a
d2pmta2
A:1-80
2b
d2pmtb2
B:1-80
2c
d2pmtc2
C:1-80
2d
d2pmtd2
D:1-80
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2pmtA01 (A:1-81,A:189-201)
1b: CATH_2pmtB01 (B:1-81,B:189-201)
1c: CATH_2pmtC01 (C:1-81,C:189-201)
1d: CATH_2pmtD01 (D:1-81,D:189-201)
2a: CATH_2pmtA02 (A:82-188)
2b: CATH_2pmtB02 (B:82-188)
2c: CATH_2pmtC02 (C:82-188)
2d: CATH_2pmtD02 (D:82-188)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Proteus mirabilis. Organism_taxid: 584.
(2)
1a
2pmtA01
A:1-81,A:189-201
1b
2pmtB01
B:1-81,B:189-201
1c
2pmtC01
C:1-81,C:189-201
1d
2pmtD01
D:1-81,D:189-201
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2
(267)
Homologous Superfamily
:
[code=1.20.1050.10, no name defined]
(249)
Proteus mirabilis. Organism_taxid: 584.
(2)
2a
2pmtA02
A:82-188
2b
2pmtB02
B:82-188
2c
2pmtC02
C:82-188
2d
2pmtD02
D:82-188
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_GST_C_2pmtD01 (D:90-189)
1b: PFAM_GST_C_2pmtD02 (D:90-189)
1c: PFAM_GST_C_2pmtD03 (D:90-189)
1d: PFAM_GST_C_2pmtD04 (D:90-189)
2a: PFAM_GST_N_2pmtD05 (D:1-75)
2b: PFAM_GST_N_2pmtD06 (D:1-75)
2c: PFAM_GST_N_2pmtD07 (D:1-75)
2d: PFAM_GST_N_2pmtD08 (D:1-75)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GST_C
(118)
Family
:
GST_C
(102)
Proteus mirabilis
(2)
1a
GST_C-2pmtD01
D:90-189
1b
GST_C-2pmtD02
D:90-189
1c
GST_C-2pmtD03
D:90-189
1d
GST_C-2pmtD04
D:90-189
Clan
:
Thioredoxin
(367)
Family
:
GST_N
(88)
Proteus mirabilis
(2)
2a
GST_N-2pmtD05
D:1-75
2b
GST_N-2pmtD06
D:1-75
2c
GST_N-2pmtD07
D:1-75
2d
GST_N-2pmtD08
D:1-75
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (134 KB)
Header - Asym.Unit
Biol.Unit 1 (67 KB)
Header - Biol.Unit 1
Biol.Unit 2 (66 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2PMT
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
