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2PLS
Biol. Unit 3
Info
Asym.Unit (194 KB)
Biol.Unit 1 (50 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (33 KB)
Biol.Unit 4 (34 KB)
Biol.Unit 5 (34 KB)
Biol.Unit 6 (33 KB)
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(1)
Title
:
STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF THE CORC/HLYC TRANSPORTER ASSOCIATED DOMAIN OF A CBS DOMAIN PROTEIN FROM CHLOROBIUM TEPIDUM TLS
Authors
:
K. Tan, L. Volkart, S. Clancy, A. Joachimiak, Midwest Center For Str Genomics (Mcsg)
Date
:
20 Apr 07 (Deposition) - 22 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.15
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H (1x)
Biol. Unit 4: I,J (1x)
Biol. Unit 5: K (2x)
Biol. Unit 6: L (2x)
Keywords
:
Apc86064. 2, Corc/Hlyc Transporter Associated Domain, Cbs Domain Protein, Chlorobium Tepidum Tls, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
(Keyword Search:
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Reference
:
K. Tan, L. Volkart, S. Clancy, A. Joachimiak
The Crystal Structure Of The Corc/Hlyc Transporter Associated Domain Of A Cbs Domain Protein From Chlorobium Tepidum Tls.
To Be Published
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
2m: 1,2-ETHANEDIOL (EDOm)
3a: FORMIC ACID (FMTa)
3b: FORMIC ACID (FMTb)
3c: FORMIC ACID (FMTc)
3d: FORMIC ACID (FMTd)
3e: FORMIC ACID (FMTe)
3f: FORMIC ACID (FMTf)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
5a: SELENOMETHIONINE (MSEa)
5aa: SELENOMETHIONINE (MSEaa)
5ab: SELENOMETHIONINE (MSEab)
5ac: SELENOMETHIONINE (MSEac)
5ad: SELENOMETHIONINE (MSEad)
5ae: SELENOMETHIONINE (MSEae)
5af: SELENOMETHIONINE (MSEaf)
5ag: SELENOMETHIONINE (MSEag)
5ah: SELENOMETHIONINE (MSEah)
5ai: SELENOMETHIONINE (MSEai)
5aj: SELENOMETHIONINE (MSEaj)
5b: SELENOMETHIONINE (MSEb)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
5h: SELENOMETHIONINE (MSEh)
5i: SELENOMETHIONINE (MSEi)
5j: SELENOMETHIONINE (MSEj)
5k: SELENOMETHIONINE (MSEk)
5l: SELENOMETHIONINE (MSEl)
5m: SELENOMETHIONINE (MSEm)
5n: SELENOMETHIONINE (MSEn)
5o: SELENOMETHIONINE (MSEo)
5p: SELENOMETHIONINE (MSEp)
5q: SELENOMETHIONINE (MSEq)
5r: SELENOMETHIONINE (MSEr)
5s: SELENOMETHIONINE (MSEs)
5t: SELENOMETHIONINE (MSEt)
5u: SELENOMETHIONINE (MSEu)
5v: SELENOMETHIONINE (MSEv)
5w: SELENOMETHIONINE (MSEw)
5x: SELENOMETHIONINE (MSEx)
5y: SELENOMETHIONINE (MSEy)
5z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
-1
Ligand/Ion
ACETATE ION
2
EDO
-1
Ligand/Ion
1,2-ETHANEDIOL
3
FMT
-1
Ligand/Ion
FORMIC ACID
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
[
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Sites
(3, 3)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ASP G:413 , ASP G:415 , HOH G:650 , ASP H:420 , HOH H:617 , HOH H:622
BINDING SITE FOR RESIDUE MG G 603
2
AC5
SOFTWARE
ASP G:420 , HOH G:614 , HOH G:644 , ASP H:413 , ASP H:415 , MG H:602 , HOH H:623
BINDING SITE FOR RESIDUE MG H 601
3
AC6
SOFTWARE
ASP G:413 , ASP G:415 , ASP G:420 , ASP H:413 , ASP H:415 , ASP H:420 , MG H:601
BINDING SITE FOR RESIDUE MG H 602
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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End label:
Sorry, no Info available
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2plsa1 (A:345-428)
1b: SCOP_d2plsb_ (B:)
1c: SCOP_d2plsk_ (K:)
1d: SCOP_d2plsl_ (L:)
1e: SCOP_d2plsc_ (C:)
1f: SCOP_d2plsd_ (D:)
1g: SCOP_d2plse_ (E:)
1h: SCOP_d2plsf_ (F:)
1i: SCOP_d2plsg_ (G:)
1j: SCOP_d2plsh_ (H:)
1k: SCOP_d2plsi_ (I:)
1l: SCOP_d2plsj_ (J:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
FAD-binding/transporter-associated domain-like
(99)
Superfamily
:
FAD-binding/transporter-associated domain-like
(99)
Family
:
CorC/HlyC domain-like
(13)
Protein domain
:
Hypothetical protein CT0541
(1)
Chlorobium tepidum [TaxId: 1097]
(1)
1a
d2plsa1
A:345-428
1b
d2plsb_
B:
1c
d2plsk_
K:
1d
d2plsl_
L:
1e
d2plsc_
C:
1f
d2plsd_
D:
1g
d2plse_
E:
1h
d2plsf_
F:
1i
d2plsg_
G:
1j
d2plsh_
H:
1k
d2plsi_
I:
1l
d2plsj_
J:
[
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CATH Domains
(1, 12)
Info
all CATH domains
1a: CATH_2plsA00 (A:343-428)
1b: CATH_2plsB00 (B:343-428)
1c: CATH_2plsG00 (G:343-427)
1d: CATH_2plsH00 (H:344-428)
1e: CATH_2plsC00 (C:343-428)
1f: CATH_2plsI00 (I:343-428)
1g: CATH_2plsJ00 (J:343-428)
1h: CATH_2plsK00 (K:343-428)
1i: CATH_2plsL00 (L:343-428)
1j: CATH_2plsD00 (D:343-427)
1k: CATH_2plsE00 (E:343-427)
1l: CATH_2plsF00 (F:343-427)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3
(63)
Homologous Superfamily
:
[code=3.30.465.10, no name defined]
(63)
Chlorobium tepidum tls. Organism_taxid: 194439. Strain: tls, dsm 12025.
(1)
1a
2plsA00
A:343-428
1b
2plsB00
B:343-428
1c
2plsG00
G:343-427
1d
2plsH00
H:344-428
1e
2plsC00
C:343-428
1f
2plsI00
I:343-428
1g
2plsJ00
J:343-428
1h
2plsK00
K:343-428
1i
2plsL00
L:343-428
1j
2plsD00
D:343-427
1k
2plsE00
E:343-427
1l
2plsF00
F:343-427
[
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Pfam Domains
(1, 12)
Info
all PFAM domains
1a: PFAM_CorC_HlyC_2plsL01 (L:346-428)
1b: PFAM_CorC_HlyC_2plsL02 (L:346-428)
1c: PFAM_CorC_HlyC_2plsL03 (L:346-428)
1d: PFAM_CorC_HlyC_2plsL04 (L:346-428)
1e: PFAM_CorC_HlyC_2plsL05 (L:346-428)
1f: PFAM_CorC_HlyC_2plsL06 (L:346-428)
1g: PFAM_CorC_HlyC_2plsL07 (L:346-428)
1h: PFAM_CorC_HlyC_2plsL08 (L:346-428)
1i: PFAM_CorC_HlyC_2plsL09 (L:346-428)
1j: PFAM_CorC_HlyC_2plsL10 (L:346-428)
1k: PFAM_CorC_HlyC_2plsL11 (L:346-428)
1l: PFAM_CorC_HlyC_2plsL12 (L:346-428)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: CorC_HlyC]
(12)
Family
:
CorC_HlyC
(12)
Chlorobium tepidum
(1)
1a
CorC_HlyC-2plsL01
L:346-428
1b
CorC_HlyC-2plsL02
L:346-428
1c
CorC_HlyC-2plsL03
L:346-428
1d
CorC_HlyC-2plsL04
L:346-428
1e
CorC_HlyC-2plsL05
L:346-428
1f
CorC_HlyC-2plsL06
L:346-428
1g
CorC_HlyC-2plsL07
L:346-428
1h
CorC_HlyC-2plsL08
L:346-428
1i
CorC_HlyC-2plsL09
L:346-428
1j
CorC_HlyC-2plsL10
L:346-428
1k
CorC_HlyC-2plsL11
L:346-428
1l
CorC_HlyC-2plsL12
L:346-428
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