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2PIJ
Asym. Unit
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Asym.Unit (50 KB)
Biol.Unit 1 (42 KB)
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(1)
Title
:
STRUCTURE OF THE CRO PROTEIN FROM PROPHAGE PFL 6 IN PSEUDOMONAS FLUORESCENS PF-5
Authors
:
C. G. Roessler, S. A. Roberts, W. R. Montfort, M. H. J. Cordes
Date
:
13 Apr 07 (Deposition) - 04 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Transcription Factor, Helix-Turn-Helix, Prophage, Structural Evolution, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. G. Roessler, B. M. Hall, W. J. Anderson, W. M. Ingram, S. A. Roberts, W. R. Montfort, M. H. Cordes
Transitive Homology-Guided Structural Studies Lead To Discovery Of Cro Proteins With 40% Sequence Identity But Different Folds.
Proc. Natl. Acad. Sci. Usa V. 105 2343 2008
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: BICARBONATE ION (BCTa)
2a: 2,3-DIHYDROXY-1,4-DITHIOBUTANE (DTTa)
3a: SELENOMETHIONINE (MSEa)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
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No.
Name
Count
Type
Full Name
1
BCT
1
Ligand/Ion
BICARBONATE ION
2
DTT
1
Ligand/Ion
2,3-DIHYDROXY-1,4-DITHIOBUTANE
3
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
4
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:35 , TYR B:45 , GLU B:46 , HOH B:717
BINDING SITE FOR RESIDUE SO4 B 501
2
AC2
SOFTWARE
LYS A:3 , LYS B:3 , SER B:31 , ARG B:35
BINDING SITE FOR RESIDUE SO4 A 502
3
AC3
SOFTWARE
LYS B:3 , GLN B:32 , ARG B:35 , HOH B:711
BINDING SITE FOR RESIDUE SO4 B 503
4
AC4
SOFTWARE
ARG A:56 , ILE A:58 , LYS B:8 , ARG B:38 , HOH B:722
BINDING SITE FOR RESIDUE SO4 B 504
5
AC5
SOFTWARE
ASN A:26 , GLN A:27 , SER A:28 , HOH A:627
BINDING SITE FOR RESIDUE BCT A 601
6
AC6
SOFTWARE
SER B:7 , GLY B:24 , ASN B:26 , HOH B:726 , HOH B:727
BINDING SITE FOR RESIDUE DTT B 701
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2pija_ (A:)
1b: SCOP_d2pijb_ (B:)
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Protein Domains
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
lambda repressor-like DNA-binding domains
(180)
Superfamily
:
lambda repressor-like DNA-binding domains
(180)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Pseudomonas fluorescens [TaxId: 220664]
(1)
1a
d2pija_
A:
1b
d2pijb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2pijB00 (B:2-60)
1b: CATH_2pijA00 (A:2-59)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
434 Repressor (Amino-terminal Domain)
(116)
Homologous Superfamily
:
lambda repressor-like DNA-binding domains
(100)
Pseudomonas fluorescens pf-5. Organism_taxid: 220664. Strain: pf-5.
(1)
1a
2pijB00
B:2-60
1b
2pijA00
A:2-59
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Pfam Domains
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Asymmetric Unit 1
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