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2PH4
Asym. Unit
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Asym.Unit (51 KB)
Biol.Unit 1 (46 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A NOVEL ARG49 PHOSPHOLIPASE A2 HOMOLOGUE FROM ZHAOERMIA MANGSHANENSIS VENOM
Authors
:
M. T. Murakami, U. Kuch, D. Mebs, R. K. Arni
Date
:
10 Apr 07 (Deposition) - 18 Mar 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Snake Venom, Arg49, Phospholipase A2, Myotoxin, Toxin
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
M. T. Murakami, U. Kuch, C. Betzel, D. Mebs, R. K. Arni
Crystal Structure Of A Novel Myotoxic Arg49 Phospholipase A(2) Homolog (Zhaoermiatoxin) From Zhaoermia Mangshanensis Snake Venom: Insights Into Arg49 Coordination And The Role Of Lys122 In The Polarization Of The C-Terminus.
Toxicon V. 51 723 2008
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: DI(HYDROXYETHYL)ETHER (PEGa)
1b: DI(HYDROXYETHYL)ETHER (PEGb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
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No.
Name
Count
Type
Full Name
1
PEG
2
Ligand/Ion
DI(HYDROXYETHYL)ETHER
2
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:32 , ARG A:34 , ARG A:49 , HOH A:474 , HOH A:486 , PHE B:119
BINDING SITE FOR RESIDUE SO4 A 301
2
AC2
SOFTWARE
ARG A:34 , LYS A:53
BINDING SITE FOR RESIDUE SO4 A 302
3
AC3
SOFTWARE
ARG B:34 , ARG B:49 , HOH B:484
BINDING SITE FOR RESIDUE SO4 B 303
4
AC4
SOFTWARE
LYS A:69 , TYR B:21 , LYS B:115 , ARG B:118 , HOH B:458
BINDING SITE FOR RESIDUE SO4 B 304
5
AC5
SOFTWARE
LYS A:132 , CYS A:133 , HOH A:449 , ARG B:34 , LYS B:53
BINDING SITE FOR RESIDUE SO4 B 305
6
AC6
SOFTWARE
HOH A:424 , HOH A:459
BINDING SITE FOR RESIDUE PEG A 401
7
AC7
SOFTWARE
PRO B:18 , TYR B:22 , THR B:23 , HOH B:491
BINDING SITE FOR RESIDUE PEG B 402
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PA2_HIS (A:44-51,B:44-51)
2: PA2_ASP (A:95-105,B:95-105)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PA2_HIS
PS00118
Phospholipase A2 histidine active site.
PA2H_PROMB
43-50
2
A:44-51
B:44-51
2
PA2_ASP
PS00119
Phospholipase A2 aspartic acid active site.
PA2H_PROMB
85-95
2
A:95-105
B:95-105
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ph4a_ (A:)
1b: SCOP_d2ph4b_ (B:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Phospholipase A2, PLA2
(282)
Superfamily
:
Phospholipase A2, PLA2
(282)
Family
:
Vertebrate phospholipase A2
(271)
Protein domain
:
automated matches
(75)
Zhaoermia mangshanensis [TaxId: 242058]
(1)
1a
d2ph4a_
A:
1b
d2ph4b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ph4A00 (A:1-133)
1b: CATH_2ph4B00 (B:1-133)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
Phospholipase A2
(241)
Homologous Superfamily
:
Phospholipase A2
(241)
Zhaoermia mangshanensis. Organism_taxid: 242058.
(1)
1a
2ph4A00
A:1-133
1b
2ph4B00
B:1-133
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Pfam Domains
(0, 0)
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Asym.Unit (51 KB)
Header - Asym.Unit
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