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2PGJ
Asym. Unit
Info
Asym.Unit (96 KB)
Biol.Unit 1 (47 KB)
Biol.Unit 2 (47 KB)
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(1)
Title
:
CATALYSIS ASSOCIATED CONFORMATIONAL CHANGES REVEALED BY HUMAN CD38 COMPLEXED WITH A NON-HYDROLYZABLE SUBSTRATE ANALOG
Authors
:
Q. Liu, I. A. Kriksunov, C. Moreau, R. Graeff, B. V. L. Potter, H. C. Lee, Q
Date
:
09 Apr 07 (Deposition) - 24 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.71
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Wild-Type Cd38 Bound With N1-Cidpr, The Catalytic Pocket, Conformational Changes Of The Active Site, Substrate Analog Binding, Hydrolase
(Keyword Search:
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Reference
:
Q. Liu, I. A. Kriksunov, C. Moreau, R. Graeff, B. V. Potter, H. C. Lee, Q. Hao
Catalysis-Associated Conformational Changes Revealed By Human Cd38 Complexed With A Non-Hydrolyzable Substrate Analog
J. Biol. Chem. V. 282 24825 2007
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N1-CYCLIC INOSINE 5'-DIPHOSPHORIBO... (N1Ca)
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Label:
No.
Name
Count
Type
Full Name
1
N1C
1
Ligand/Ion
N1-CYCLIC INOSINE 5'-DIPHOSPHORIBOSE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:124 , TRP A:125 , SER A:126 , ARG A:127 , LEU A:145 , GLU A:146 , ASP A:155 , TRP A:189 , SER A:193 , SER A:220 , THR A:221 , PHE A:222 , GLU A:226 , HOH A:302 , HOH A:335 , HOH A:396 , HOH A:419 , HOH A:430 , HOH A:479 , HOH A:499
BINDING SITE FOR RESIDUE N1C A 301
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SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_001323 (R140W, chain A/B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_001323
R
140
W
CD38_HUMAN
Polymorphism
1800561
A/B
R
140
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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End label:
Sorry, no Info available
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Exons
(8, 16)
Info
All Exons
Exon 1.1b (A:45-78 | B:45-78)
Exon 1.2a (A:78-121 | B:78-121)
Exon 1.3b (A:122-167 | B:122-167)
Exon 1.4 (A:167-195 | B:167-195)
Exon 1.5 (A:196-220 | B:196-220)
Exon 1.6 (A:220-251 | B:220-251)
Exon 1.7b (A:251-280 | B:251-280)
Exon 1.8b (A:280-296 | B:280-296)
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All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.2a
3: Boundary 1.2a/1.3b
4: Boundary 1.3b/1.4
5: Boundary 1.4/1.5
6: Boundary 1.5/1.6
7: Boundary 1.6/1.7b
8: Boundary 1.7b/1.8b
9: Boundary 1.8b/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000226279
1b
ENSE00001131145
chr4:
15779901-15780270
370
CD38_HUMAN
1-78
78
2
A:45-78
B:45-78
34
34
1.2a
ENST00000226279
2a
ENSE00000705354
chr4:
15818134-15818263
130
CD38_HUMAN
78-121
44
2
A:78-121
B:78-121
44
44
1.3b
ENST00000226279
3b
ENSE00000705352
chr4:
15826504-15826639
136
CD38_HUMAN
122-167
46
2
A:122-167
B:122-167
46
46
1.4
ENST00000226279
4
ENSE00000404201
chr4:
15835840-15835925
86
CD38_HUMAN
167-195
29
2
A:167-195
B:167-195
29
29
1.5
ENST00000226279
5
ENSE00000705349
chr4:
15839715-15839788
74
CD38_HUMAN
196-220
25
2
A:196-220
B:196-220
25
25
1.6
ENST00000226279
6
ENSE00000705347
chr4:
15841649-15841741
93
CD38_HUMAN
220-251
32
2
A:220-251
B:220-251
32
32
1.7b
ENST00000226279
7b
ENSE00000404204
chr4:
15842075-15842161
87
CD38_HUMAN
251-280
30
2
A:251-280
B:251-280
30
30
1.8b
ENST00000226279
8b
ENSE00001131136
chr4:
15850162-15851069
908
CD38_HUMAN
280-300
21
2
A:280-296
B:280-296
17
17
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2pgja_ (A:)
1b: SCOP_d2pgjb_ (B:)
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
N-(deoxy)ribosyltransferase-like
(76)
Family
:
ADP ribosyl cyclase-like
(60)
Protein domain
:
ADP ribosyl cyclase
(42)
Human (Homo sapiens) [TaxId: 9606]
(33)
1a
d2pgja_
A:
1b
d2pgjb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2pgjA01 (A:45-116,A:144-199)
1b: CATH_2pgjB01 (B:45-116,B:144-199)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
ADP Ribosyl Cyclase; Chain A, domain 1
(29)
Homologous Superfamily
:
ADP Ribosyl Cyclase; Chain A, domain 1
(29)
Human (Homo sapiens)
(20)
1a
2pgjA01
A:45-116,A:144-199
1b
2pgjB01
B:45-116,B:144-199
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Rib_hydrolayse_2pgjB01 (B:56-296)
1b: PFAM_Rib_hydrolayse_2pgjB02 (B:56-296)
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Clan
:
Nribosyltransf
(19)
Family
:
Rib_hydrolayse
(14)
Homo sapiens (Human)
(10)
1a
Rib_hydrolayse-2pgjB01
B:56-296
1b
Rib_hydrolayse-2pgjB02
B:56-296
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Asym.Unit (96 KB)
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