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2PBD
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (102 KB)
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(1)
Title
:
TERNARY COMPLEX OF PROFILIN-ACTIN WITH THE POLY-PRO-GAB DOMAIN OF VASP*
Authors
:
F. Ferron, G. Rebowski, R. Dominguez
Date
:
28 Mar 07 (Deposition) - 13 Nov 07 (Release) - 06 Mar 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A,P,V
Biol. Unit 1: A,P,V (1x)
Keywords
:
Ternary Complex; Profilin; Actin; Vasp; Poly-Proline; Loading Poly- Pro Site; Gab Domain, Structural Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Ferron, G. Rebowski, S. H. Lee, R. Dominguez
Structural Basis For The Recruitment Of Profilin-Actin Complexes During Filament Elongation By Ena/Vasp
Embo J. V. 26 4597 2007
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2a: CALCIUM ION (CAa)
3a: 4-METHYL-HISTIDINE (HICa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
1
Ligand/Ion
CALCIUM ION
3
HIC
1
Mod. Amino Acid
4-METHYL-HISTIDINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ATP A:1001 , HOH A:1021 , HOH A:1052 , HOH A:1063 , HOH A:1117 , HOH A:1470
BINDING SITE FOR RESIDUE CA A 1002
2
AC2
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , LEU A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , ARG A:210 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , LYS A:336 , CA A:1002 , HOH A:1003 , HOH A:1052 , HOH A:1071 , HOH A:1086 , HOH A:1132 , HOH A:1183 , HOH A:1256 , HOH A:1375 , HOH A:1450 , HOH A:1463 , HOH A:1470
BINDING SITE FOR RESIDUE ATP A 1001
[
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_068925 (C70G, chain P, )
2: VAR_068926 (M113T, chain P, )
3: VAR_068927 (E116G, chain P, )
4: VAR_068928 (G117V, chain P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_068925
C
71
G
PROF1_HUMAN
Disease (ALS18)
---
P
C
70
G
2
UniProt
VAR_068926
M
114
T
PROF1_HUMAN
Disease (ALS18)
---
P
M
113
T
3
UniProt
VAR_068927
E
117
G
PROF1_HUMAN
Unclassified
140547520
P
E
116
G
4
UniProt
VAR_068928
G
118
V
PROF1_HUMAN
Disease (ALS18)
---
P
G
117
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63)
2: ACTINS_ACT_LIKE (A:104-116)
3: ACTINS_2 (A:356-364)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTS_RABIT
55-65
1
A:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTS_RABIT
106-118
1
A:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTS_RABIT
358-366
1
A:356-364
[
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]
Exons
(4, 4)
Info
All Exons
Exon 1.1 (P:1-43)
Exon 1.2 (P:44-108)
Exon 1.3 (P:108-139)
Exon 2.6 (V:202-238 (gaps))
View:
Select:
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/-
5: Boundary 2.5/2.6
6: Boundary 2.6/2.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000225655
1
ENSE00001324890
chr17:
4852309-4851558
752
PROF1_HUMAN
1-44
44
1
P:1-43
43
1.2
ENST00000225655
2
ENSE00000676461
chr17:
4850115-4849923
193
PROF1_HUMAN
45-109
65
1
P:44-108
65
1.3
ENST00000225655
3
ENSE00001488299
chr17:
4849292-4848947
346
PROF1_HUMAN
109-140
32
1
P:108-139
32
2.1
ENST00000245932
1
ENSE00001375539
chr19:
46010688-46011034
347
VASP_HUMAN
1-2
2
0
-
-
2.2
ENST00000245932
2
ENSE00001742627
chr19:
46020921-46021092
172
VASP_HUMAN
2-59
58
0
-
-
2.3
ENST00000245932
3
ENSE00000858230
chr19:
46021187-46021352
166
VASP_HUMAN
60-115
56
0
-
-
2.4
ENST00000245932
4
ENSE00000858231
chr19:
46024580-46024664
85
VASP_HUMAN
115-143
29
0
-
-
2.5
ENST00000245932
5
ENSE00000858232
chr19:
46025426-46025475
50
VASP_HUMAN
143-160
18
0
-
-
2.6
ENST00000245932
6
ENSE00000858233
chr19:
46025598-46025839
242
VASP_HUMAN
160-240
81
1
V:202-238 (gaps)
37
2.7
ENST00000245932
7
ENSE00001635606
chr19:
46025976-46026076
101
VASP_HUMAN
241-274
34
0
-
-
2.8
ENST00000245932
8
ENSE00000858235
chr19:
46026902-46026953
52
VASP_HUMAN
274-291
18
0
-
-
2.9
ENST00000245932
9
ENSE00000858236
chr19:
46027099-46027135
37
VASP_HUMAN
292-304
13
0
-
-
2.10
ENST00000245932
10
ENSE00000858237
chr19:
46027355-46027400
46
VASP_HUMAN
304-319
16
0
-
-
2.11
ENST00000245932
11
ENSE00000858238
chr19:
46027828-46027918
91
VASP_HUMAN
319-349
31
0
-
-
2.12
ENST00000245932
12
ENSE00000858239
chr19:
46029204-46029261
58
VASP_HUMAN
350-369
20
0
-
-
2.13
ENST00000245932
13
ENSE00001112676
chr19:
46029398-46030236
839
VASP_HUMAN
369-380
12
0
-
-
[
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]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2pbdp_ (P:)
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Classes
(
)
(
)
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(
)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Profilin-like
(304)
Superfamily
:
Profilin (actin-binding protein)
(31)
Family
:
Profilin (actin-binding protein)
(29)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2pbdp_
P:
[
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CATH Domains
(3, 4)
Info
all CATH domains
1a: CATH_2pbdP00 (P:1-139)
2a: CATH_2pbdA01 (A:5-31,A:74-138,A:338-375)
2b: CATH_2pbdA03 (A:139-185,A:275-337)
3a: CATH_2pbdA04 (A:186-274)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-Lactamase
(202)
Homologous Superfamily
:
Dynein light chain 2a, cytoplasmic
(37)
Rabbit (Oryctolagus cuniculus)
(2)
1a
2pbdP00
P:1-139
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Rabbit (Oryctolagus cuniculus)
(44)
2a
2pbdA01
A:5-31,A:74-138,A:338-375
2b
2pbdA03
A:139-185,A:275-337
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Rabbit (Oryctolagus cuniculus)
(44)
3a
2pbdA04
A:186-274
[
close CATH info
]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Actin_2pbdA01 (A:5-375)
2a: PFAM_Profilin_2pbdP01 (P:2-134)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Oryctolagus cuniculus (Rabbit)
(47)
1a
Actin-2pbdA01
A:5-375
Clan
:
PF
(25)
Family
:
Profilin
(15)
Homo sapiens (Human)
(3)
2a
Profilin-2pbdP01
P:2-134
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