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2PA3
Asym. Unit
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Asym.Unit (70 KB)
Biol.Unit 1 (253 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF SERINE BOUND G336V MUTANT OF E.COLI PHOSPHOGLYCERATE DEHYDROGENASE
Authors
:
S. Dey, J. C. Sacchettini
Date
:
27 Mar 07 (Deposition) - 24 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.74
Chains
:
Asym. Unit : A
Biol. Unit 1: A (4x)
Keywords
:
Oxidoreductase, Phosphoglycerate Dehydrogenase, Serine Biosynthesis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Dey, Z. Hu, X. L. Xu, J. C. Sacchettini, G. A. Grant
The Effect Of Hinge Mutations On Effector Binding And Domai Rotation In Escherichia Coli D-3-Phosphoglycerate Dehydrogenase.
J. Biol. Chem. V. 282 18418 2007
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
2a: SERINE (SERa)
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No.
Name
Count
Type
Full Name
1
NAI
1
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
2
SER
1
Mod. Amino Acid
SERINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:344 , ASN A:346 , ARG A:347 , PRO A:348 , GLY A:349 , LEU A:351 , ASN A:364 , ILE A:365 , HOH A:467
BINDING SITE FOR RESIDUE SER A 451
2
AC2
SOFTWARE
ILE A:84 , PHE A:106 , ASN A:108 , VAL A:112 , TYR A:159 , GLY A:160 , HIS A:161 , ILE A:162 , TYR A:180 , ASP A:181 , ILE A:182 , LYS A:185 , HIS A:210 , VAL A:211 , PRO A:212 , SER A:216 , THR A:217 , MET A:220 , ALA A:238 , SER A:239 , ARG A:240 , ASP A:264 , HIS A:292 , GLY A:294 , GLY A:295
BINDING SITE FOR RESIDUE NAI A 450
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: D_2_HYDROXYACID_DH_1 (A:154-181)
2: D_2_HYDROXYACID_DH_2 (A:200-222)
3: D_2_HYDROXYACID_DH_3 (A:229-245)
4: ACT (A:339-410)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
D_2_HYDROXYACID_DH_1
PS00065
D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature.
SERA_ECOLI
154-181
1
A:154-181
2
D_2_HYDROXYACID_DH_2
PS00670
D-isomer specific 2-hydroxyacid dehydrogenases signature 2.
SERA_ECOLI
200-222
1
A:200-222
3
D_2_HYDROXYACID_DH_3
PS00671
D-isomer specific 2-hydroxyacid dehydrogenases signature 3.
SERA_ECOLI
229-245
1
A:229-245
4
ACT
PS51671
ACT domain profile.
SERA_ECOLI
339-410
1
A:339-410
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2pa3a3 (A:327-410)
2a: SCOP_d2pa3a2 (A:7-107,A:296-326)
3a: SCOP_d2pa3a1 (A:108-295)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
ACT-like
(63)
Family
:
Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
(9)
Protein domain
:
Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
(9)
Escherichia coli [TaxId: 562]
(7)
1a
d2pa3a3
A:327-410
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
Formate/glycerate dehydrogenase catalytic domain-like
(49)
Family
:
Formate/glycerate dehydrogenases, substrate-binding domain
(21)
Protein domain
:
Phosphoglycerate dehydrogenase
(9)
Escherichia coli [TaxId: 562]
(7)
2a
d2pa3a2
A:7-107,A:296-326
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
Formate/glycerate dehydrogenases, NAD-domain
(49)
Protein domain
:
Phosphoglycerate dehydrogenase
(9)
Escherichia coli [TaxId: 562]
(7)
3a
d2pa3a1
A:108-295
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CATH Domains
(2, 3)
Info
all CATH domains
1a: CATH_2pa3A03 (A:328-409)
2a: CATH_2pa3A02 (A:109-297)
2b: CATH_2pa3A01 (A:5-108,A:298-326)
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)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.260, no name defined]
(34)
Escherichia coli. Organism_taxid: 562.
(7)
1a
2pa3A03
A:328-409
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Escherichia coli. Organism_taxid: 562.
(48)
2a
2pa3A02
A:109-297
2b
2pa3A01
A:5-108,A:298-326
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Pfam Domains
(3, 3)
Info
all PFAM domains
1a: PFAM_ACT_2pa3A01 (A:339-402)
2a: PFAM_2_Hacid_dh_2pa3A02 (A:13-326)
3a: PFAM_2_Hacid_dh_C_2pa3A03 (A:117-294)
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Clan
:
ACT
(34)
Family
:
ACT
(19)
Escherichia coli (strain K12)
(5)
1a
ACT-2pa3A01
A:339-402
Clan
:
Form_Glyc_dh
(56)
Family
:
2-Hacid_dh
(21)
Escherichia coli (strain K12)
(5)
2a
2-Hacid_dh-2pa3A02
A:13-326
Clan
:
NADP_Rossmann
(1239)
Family
:
2-Hacid_dh_C
(23)
Escherichia coli (strain K12)
(5)
3a
2-Hacid_dh_C-2pa3A03
A:117-294
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Asymmetric Unit 1
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