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2P86
Asym. Unit
Info
Asym.Unit (91 KB)
Biol.Unit 1 (86 KB)
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(1)
Title
:
THE HIGH RESOLUTION CRYSTAL STRUCTURE OF ROHEDSAIN, THE MAJOR CATHEPSIN L PROTEASE FROM T. BRUCEI RHODESIENSE, BOUND TO INHIBITOR K11002
Authors
:
L. S. Brinen, R. Marion
Date
:
21 Mar 07 (Deposition) - 01 Apr 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.16
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Cysteine Protease, Trypanosoma Brucei, Neglected Disease, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Marion, E. Hansell, C. Caffrey, W. R. Roush, L. S. Brinen
The High Resolution Structure Of Rhodesain, The Major Cathepsin L Protease From Trypanosoma Brucei Rhodesiense, Illustrates The Basis For Differences In Inhibition Profiles From Other Papain Family Cysteine Proteases
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(2, 12)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
2a: 3-[[N-[MORPHOLIN-N-YL]-CARBONYL]-P... (VS1a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
2
VS1
1
Ligand/Ion
3-[[N-[MORPHOLIN-N-YL]-CARBONYL]-PHENYLALANINYL-AMINO]-5- PHENYL-PENTANE-1-SULFONYLBENZENE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ALA A:1 , PRO A:2 , ALA A:3 , GLN A:19 , GLY A:23 , CYS A:25 , TRP A:26 , PHE A:61 , CYS A:63 , GLY A:65 , GLY A:66 , LEU A:67 , ALA A:138 , MET A:145 , ASP A:161 , HIS A:162 , TRP A:184 , HOH A:440 , HOH A:607 , HOH A:691
BINDING SITE FOR RESIDUE VS1 A 300
02
AC2
SOFTWARE
ASP A:121 , GLU A:122 , GLY A:199 , ASN A:206 , HOH A:510 , HOH A:558 , HOH A:561 , HOH A:683
BINDING SITE FOR RESIDUE EDO A 901
03
AC3
SOFTWARE
LYS A:17 , ASP A:18 , TYR A:91 , HOH A:505 , HOH A:827
BINDING SITE FOR RESIDUE EDO A 903
04
AC4
SOFTWARE
THR A:14 , LEU A:45 , SER A:47 , HOH A:466 , HOH A:739 , HOH A:763
BINDING SITE FOR RESIDUE EDO A 905
05
AC5
SOFTWARE
ASP A:18 , GLN A:19 , GLY A:20 , TRP A:184 , HOH A:607 , HOH A:627 , HOH A:665 , HOH A:826
BINDING SITE FOR RESIDUE EDO A 906
06
AC6
SOFTWARE
GLU A:97 , PRO A:99 , HOH A:609 , HOH A:624 , HOH A:782
BINDING SITE FOR RESIDUE EDO A 907
07
AC7
SOFTWARE
ALA A:87 , THR A:153 , HOH A:494 , HOH A:653 , HOH A:713 , HOH A:808
BINDING SITE FOR RESIDUE EDO A 908
08
AC8
SOFTWARE
PRO A:15 , ASP A:117 , HOH A:424 , HOH A:445 , HOH A:513
BINDING SITE FOR RESIDUE EDO A 910
09
AC9
SOFTWARE
ARG A:8 , THR A:14 , PRO A:15 , TYR A:193
BINDING SITE FOR RESIDUE EDO A 911
10
BC1
SOFTWARE
ASP A:117 , TYR A:128 , HOH A:529 , HOH A:776
BINDING SITE FOR RESIDUE EDO A 912
11
BC2
SOFTWARE
SER A:154 , HOH A:491 , HOH A:518 , HOH A:562 , HOH A:713
BINDING SITE FOR RESIDUE EDO A 913
12
BC3
SOFTWARE
PHE A:61 , HOH A:784
BINDING SITE FOR RESIDUE EDO A 914
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2p86a_ (A:)
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Papain-like
(200)
Protein domain
:
automated matches
(30)
Trypanosoma brucei [TaxId: 31286]
(2)
1a
d2p86a_
A:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2p86A00 (A:1-215)
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(
)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Cathepsin B; Chain A
(207)
Homologous Superfamily
:
Cysteine proteinases
(207)
Trypanosoma brucei rhodesiense. Organism_taxid: 31286. Strain: rhodesiense.
(2)
1a
2p86A00
A:1-215
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_C1_2p86A01 (A:1-213)
2a: PFAM_DUF3586_2p86A02 (A:213-215)
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)
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)
Clan
:
Peptidase_CA
(169)
Family
:
Peptidase_C1
(81)
Trypanosoma brucei rhodesiense
(2)
1a
Peptidase_C1-2p86A01
A:1-213
Clan
:
no clan defined [family: DUF3586]
(2)
Family
:
DUF3586
(2)
Trypanosoma brucei rhodesiense
(2)
2a
DUF3586-2p86A02
A:213-215
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Chain A
Asymmetric Unit 1
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Asym.Unit (91 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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