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2P6S
Asym. Unit
Info
Asym.Unit (221 KB)
Biol.Unit 1 (209 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR NMB0573/L-MET COMPLEX FROM NEISSERIA MENINGITIDIS
Authors
:
J. Ren, S. Sainsbury, R. J. Owens, Oxford Protein Production Facili
Date
:
19 Mar 07 (Deposition) - 03 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Nmb0573, Transcriptional Regulator, Lrp/Asnc-Family, Structural Genomics, Structural And Functional Analysis Of N. Meninigitidis Transcriptional Regulators, Oxford Protein Production Facility, Oppf, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Ren, S. Sainsbury, S. E. Combs, R. G. Capper, P. W. Jordan, N. S. Berrow, D. K. Stammers, N. J. Saunders, R. J. Owens
The Structure And Transcriptional Analysis Of A Global Regulator From Neisseria Meningitidis.
J. Biol. Chem. V. 282 14655 2007
[
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Hetero Components
(4, 38)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
1g: CALCIUM ION (CAg)
1h: CALCIUM ION (CAh)
1i: CALCIUM ION (CAi)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
3a: METHIONINE (METa)
3b: METHIONINE (METb)
3c: METHIONINE (METc)
3d: METHIONINE (METd)
3e: METHIONINE (METe)
3f: METHIONINE (METf)
3g: METHIONINE (METg)
3h: METHIONINE (METh)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
4f: SELENOMETHIONINE (MSEf)
4g: SELENOMETHIONINE (MSEg)
4h: SELENOMETHIONINE (MSEh)
4i: SELENOMETHIONINE (MSEi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
9
Ligand/Ion
CALCIUM ION
2
GOL
12
Ligand/Ion
GLYCEROL
3
MET
8
Ligand/Ion
METHIONINE
4
MSE
9
Mod. Amino Acid
SELENOMETHIONINE
[
close Hetero Component info
]
Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:136 , GLN B:138 , GLU H:105
BINDING SITE FOR RESIDUE CA B 961
02
AC2
SOFTWARE
GLY A:67 , ASN D:118
BINDING SITE FOR RESIDUE CA D 1020
03
AC3
SOFTWARE
GLY C:67 , ASN F:118
BINDING SITE FOR RESIDUE CA C 161
04
AC4
SOFTWARE
GLU D:105 , ASP F:136 , HOH F:1169
BINDING SITE FOR RESIDUE CA F 932
05
AC5
SOFTWARE
GLU F:105 , HOH F:1180 , ASP H:136
BINDING SITE FOR RESIDUE CA F 1050
06
AC6
SOFTWARE
ASN B:118
BINDING SITE FOR RESIDUE CA B 978
07
AC7
SOFTWARE
GLY E:67 , HOH E:1183 , HOH E:1184 , HOH E:1185 , HOH H:1170 , HOH H:1171
BINDING SITE FOR RESIDUE CA E 216
08
AC8
SOFTWARE
ASN E:118 , HOH H:1174 , HOH H:1175
BINDING SITE FOR RESIDUE CA E 227
09
AC9
SOFTWARE
GLU B:62 , GLY B:67 , HOH B:1165 , HOH B:1175 , ASN G:118
BINDING SITE FOR RESIDUE CA B 999
10
BC1
SOFTWARE
ALA A:101 , LEU A:102 , THR A:103 , GLY A:104 , THR A:106 , ASP A:107 , TYR A:108 , LEU G:129 , ALA G:137 , GLN G:138 , SER G:139
BINDING SITE FOR RESIDUE MET A 1160
11
BC2
SOFTWARE
ARG B:83 , LEU B:102 , THR B:103 , GLY B:104 , THR B:106 , ASP B:107 , TYR B:108 , VAL D:124 , LEU D:125 , LEU D:129 , ALA D:137 , GLN D:138 , SER D:139
BINDING SITE FOR RESIDUE MET B 1160
12
BC3
SOFTWARE
LEU A:125 , LEU A:129 , ALA A:137 , GLN A:138 , SER A:139 , ARG C:83 , ALA C:101 , LEU C:102 , THR C:103 , GLY C:104 , THR C:106 , ASP C:107
BINDING SITE FOR RESIDUE MET C 1160
13
BC4
SOFTWARE
LEU C:143 , ARG D:83 , LEU D:102 , THR D:103 , GLY D:104 , ASP D:107 , LEU F:125 , LEU F:129 , ALA F:137 , GLN F:138 , SER F:139
BINDING SITE FOR RESIDUE MET D 1160
14
BC5
SOFTWARE
LEU C:129 , ALA C:137 , GLN C:138 , SER C:139 , LEU E:102 , THR E:103 , GLY E:104 , THR E:106 , ASP E:107
BINDING SITE FOR RESIDUE MET E 1160
15
BC6
SOFTWARE
LEU E:143 , ARG F:83 , ALA F:101 , LEU F:102 , THR F:103 , GLY F:104 , ASP F:107 , TYR F:108 , HOH F:1193 , VAL H:124 , LEU H:125 , LEU H:129 , ALA H:137 , GLN H:138 , SER H:139
BINDING SITE FOR RESIDUE MET F 1160
16
BC7
SOFTWARE
LEU E:125 , LEU E:129 , ALA E:137 , SER E:139 , ARG G:83 , ALA G:101 , LEU G:102 , THR G:103 , GLY G:104
BINDING SITE FOR RESIDUE MET G 1160
17
BC8
SOFTWARE
LEU B:125 , ALA B:137 , GLN B:138 , SER B:139 , ALA H:101 , LEU H:102 , THR H:103 , GLY H:104 , THR H:106 , ASP H:107 , TYR H:108
BINDING SITE FOR RESIDUE MET H 1160
18
BC9
SOFTWARE
ASN A:118 , GLY D:67 , VAL D:142 , LEU D:143
BINDING SITE FOR RESIDUE GOL A 901
19
CC1
SOFTWARE
LYS A:80 , ASP A:85
BINDING SITE FOR RESIDUE GOL A 902
20
CC2
SOFTWARE
GLN A:15 , VAL A:16 , GLU A:19 , ASN A:20 , ARG A:31
BINDING SITE FOR RESIDUE GOL A 904
21
CC3
SOFTWARE
ALA C:137 , GLN C:138 , GLU E:105 , ASP E:107
BINDING SITE FOR RESIDUE GOL E 909
22
CC4
SOFTWARE
ASP A:136 , GLN A:138 , GLU C:105
BINDING SITE FOR RESIDUE GOL A 802
23
CC5
SOFTWARE
ILE D:76 , LYS D:78 , ARG D:83 , ASP D:107 , GLN F:135 , ASP F:136
BINDING SITE FOR RESIDUE GOL F 806
24
CC6
SOFTWARE
ASP E:116 , MSE E:117 , LEU H:68 , ASP H:116 , MSE H:117
BINDING SITE FOR RESIDUE GOL H 809
25
CC7
SOFTWARE
GLN A:3 , LEU A:157
BINDING SITE FOR RESIDUE GOL A 801
26
CC8
SOFTWARE
ASN A:65
BINDING SITE FOR RESIDUE GOL A 803
27
CC9
SOFTWARE
ASN C:118 , GLY F:67 , VAL F:142 , LEU F:143 , HOH F:1173
BINDING SITE FOR RESIDUE GOL F 804
28
DC1
SOFTWARE
THR C:149
BINDING SITE FOR RESIDUE GOL C 805
29
DC2
SOFTWARE
GLU C:145 , ILE C:146 , ARG D:91
BINDING SITE FOR RESIDUE GOL C 807
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2p6sa1 (A:3-65)
1b: SCOP_d2p6sc1 (C:5-65)
1c: SCOP_d2p6sd1 (D:3-65)
1d: SCOP_d2p6se1 (E:3-65)
1e: SCOP_d2p6sf1 (F:5-65)
1f: SCOP_d2p6sg1 (G:1-65)
1g: SCOP_d2p6sh1 (H:5-65)
1h: SCOP_d2p6sb1 (B:3-65)
2a: SCOP_d2p6sa2 (A:66-158)
2b: SCOP_d2p6sd2 (D:66-158)
2c: SCOP_d2p6se2 (E:66-158)
2d: SCOP_d2p6sf2 (F:66-158)
2e: SCOP_d2p6sg2 (G:66-158)
2f: SCOP_d2p6sh2 (H:66-158)
2g: SCOP_d2p6sb2 (B:66-158)
2h: SCOP_d2p6sc2 (C:66-158)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
automated matches
(118)
Protein domain
:
automated matches
(118)
Neisseria meningitidis [TaxId: 122586]
(3)
1a
d2p6sa1
A:3-65
1b
d2p6sc1
C:5-65
1c
d2p6sd1
D:3-65
1d
d2p6se1
E:3-65
1e
d2p6sf1
F:5-65
1f
d2p6sg1
G:1-65
1g
d2p6sh1
H:5-65
1h
d2p6sb1
B:3-65
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Ferredoxin-like
(1795)
Superfamily
:
Dimeric alpha+beta barrel
(122)
Family
:
automated matches
(41)
Protein domain
:
automated matches
(41)
Neisseria meningitidis [TaxId: 122586]
(3)
2a
d2p6sa2
A:66-158
2b
d2p6sd2
D:66-158
2c
d2p6se2
E:66-158
2d
d2p6sf2
F:66-158
2e
d2p6sg2
G:66-158
2f
d2p6sh2
H:66-158
2g
d2p6sb2
B:66-158
2h
d2p6sc2
C:66-158
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2p6sA01 (A:7-58)
1b: CATH_2p6sC01 (C:7-58)
1c: CATH_2p6sD01 (D:7-58)
1d: CATH_2p6sE01 (E:7-58)
1e: CATH_2p6sF01 (F:7-58)
1f: CATH_2p6sG01 (G:7-58)
1g: CATH_2p6sH01 (H:7-58)
1h: CATH_2p6sB01 (B:7-58)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Neisseria meningitidis mc58. Organism_taxid: 122586. Strain: mc58.
(3)
1a
2p6sA01
A:7-58
1b
2p6sC01
C:7-58
1c
2p6sD01
D:7-58
1d
2p6sE01
E:7-58
1e
2p6sF01
F:7-58
1f
2p6sG01
G:7-58
1g
2p6sH01
H:7-58
1h
2p6sB01
B:7-58
[
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Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_AsnC_trans_reg_2p6sH01 (H:72-145)
1b: PFAM_AsnC_trans_reg_2p6sH02 (H:72-145)
1c: PFAM_AsnC_trans_reg_2p6sH03 (H:72-145)
1d: PFAM_AsnC_trans_reg_2p6sH04 (H:72-145)
1e: PFAM_AsnC_trans_reg_2p6sH05 (H:72-145)
1f: PFAM_AsnC_trans_reg_2p6sH06 (H:72-145)
1g: PFAM_AsnC_trans_reg_2p6sH07 (H:72-145)
1h: PFAM_AsnC_trans_reg_2p6sH08 (H:72-145)
2a: PFAM_HTH_24_2p6sH09 (H:6-53)
2b: PFAM_HTH_24_2p6sH10 (H:6-53)
2c: PFAM_HTH_24_2p6sH11 (H:6-53)
2d: PFAM_HTH_24_2p6sH12 (H:6-53)
2e: PFAM_HTH_24_2p6sH13 (H:6-53)
2f: PFAM_HTH_24_2p6sH14 (H:6-53)
2g: PFAM_HTH_24_2p6sH15 (H:6-53)
2h: PFAM_HTH_24_2p6sH16 (H:6-53)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Dim_A_B_barrel
(36)
Family
:
AsnC_trans_reg
(8)
Neisseria meningitidis serogroup B
(3)
1a
AsnC_trans_reg-2p6sH01
H:72-145
1b
AsnC_trans_reg-2p6sH02
H:72-145
1c
AsnC_trans_reg-2p6sH03
H:72-145
1d
AsnC_trans_reg-2p6sH04
H:72-145
1e
AsnC_trans_reg-2p6sH05
H:72-145
1f
AsnC_trans_reg-2p6sH06
H:72-145
1g
AsnC_trans_reg-2p6sH07
H:72-145
1h
AsnC_trans_reg-2p6sH08
H:72-145
Clan
:
HTH
(544)
Family
:
HTH_24
(3)
Neisseria meningitidis serogroup B
(3)
2a
HTH_24-2p6sH09
H:6-53
2b
HTH_24-2p6sH10
H:6-53
2c
HTH_24-2p6sH11
H:6-53
2d
HTH_24-2p6sH12
H:6-53
2e
HTH_24-2p6sH13
H:6-53
2f
HTH_24-2p6sH14
H:6-53
2g
HTH_24-2p6sH15
H:6-53
2h
HTH_24-2p6sH16
H:6-53
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