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Asym. Unit
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Asym.Unit (492 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF LARG PDZ DOMAIN IN COMPLEX WITH C-TERMINAL OCTA-PEPTIDE OF PLEXIN B1
Authors
:
J. Liu, H. Huang, Y. Yang
Date
:
05 Feb 07 (Deposition) - 12 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
Nerve System Development, Cytoskeleton Rearrangement, Cell Adhesion
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Liu, H. Huang, Y. Yang
Solution Structure Of The Larg Pdz Domain In Complex With C-Terminal Peptide Of Plexin B1
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:10-74)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
ARHGC_HUMAN
72-136
1
A:10-74
[
close PROSITE info
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Exons
(7, 7)
Info
All Exons
Exon 1.34c (B:90-97)
Exon 2.4a (A:1-3)
Exon 2.4c (A:4-5)
Exon 2.5 (A:5-38)
Exon 2.6 (A:38-54)
Exon 2.7 (A:55-74)
Exon 2.8 (A:74-89)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.33b/1.34c
2: Boundary 1.34c/-
3: Boundary 2.3b/2.4a
4: Boundary 2.4a/2.4c
5: Boundary 2.4c/2.5
6: Boundary 2.5/2.6
7: Boundary 2.6/2.7
8: Boundary 2.7/2.8
9: Boundary 2.8/2.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3b
ENST00000358536
3b
ENSE00001668057
chr3:
48470872-48470662
211
PLXB1_HUMAN
-
0
0
-
-
1.4a
ENST00000358536
4a
ENSE00001428482
chr3:
48466742-48466690
53
PLXB1_HUMAN
-
0
0
-
-
1.5a
ENST00000358536
5a
ENSE00001206107
chr3:
48466026-48464914
1113
PLXB1_HUMAN
1-369
369
0
-
-
1.6
ENST00000358536
6
ENSE00001080883
chr3:
48464356-48464174
183
PLXB1_HUMAN
370-430
61
0
-
-
1.7a
ENST00000358536
7a
ENSE00001080893
chr3:
48463868-48463740
129
PLXB1_HUMAN
431-473
43
0
-
-
1.8
ENST00000358536
8
ENSE00001080898
chr3:
48463614-48463514
101
PLXB1_HUMAN
474-507
34
0
-
-
1.9
ENST00000358536
9
ENSE00001080910
chr3:
48463215-48463083
133
PLXB1_HUMAN
507-551
45
0
-
-
1.10
ENST00000358536
10
ENSE00001080902
chr3:
48462793-48462637
157
PLXB1_HUMAN
552-604
53
0
-
-
1.11
ENST00000358536
11
ENSE00001080906
chr3:
48462365-48462257
109
PLXB1_HUMAN
604-640
37
0
-
-
1.12
ENST00000358536
12
ENSE00001080876
chr3:
48462182-48462074
109
PLXB1_HUMAN
640-676
37
0
-
-
1.13c
ENST00000358536
13c
ENSE00001326499
chr3:
48461666-48460986
681
PLXB1_HUMAN
677-903
227
0
-
-
1.13g
ENST00000358536
13g
ENSE00001673675
chr3:
48460775-48460653
123
PLXB1_HUMAN
904-944
41
0
-
-
1.14
ENST00000358536
14
ENSE00001644091
chr3:
48460448-48460326
123
PLXB1_HUMAN
945-985
41
0
-
-
1.15
ENST00000358536
15
ENSE00001632794
chr3:
48459951-48459858
94
PLXB1_HUMAN
986-1017
32
0
-
-
1.16b
ENST00000358536
16b
ENSE00001689569
chr3:
48459772-48459600
173
PLXB1_HUMAN
1017-1074
58
0
-
-
1.17
ENST00000358536
17
ENSE00001688877
chr3:
48459471-48459320
152
PLXB1_HUMAN
1075-1125
51
0
-
-
1.18b
ENST00000358536
18b
ENSE00001630248
chr3:
48457860-48457755
106
PLXB1_HUMAN
1125-1160
36
0
-
-
1.19
ENST00000358536
19
ENSE00001685598
chr3:
48457576-48457440
137
PLXB1_HUMAN
1161-1206
46
0
-
-
1.20a
ENST00000358536
20a
ENSE00001604226
chr3:
48457168-48456992
177
PLXB1_HUMAN
1206-1265
60
0
-
-
1.21c
ENST00000358536
21c
ENSE00001725709
chr3:
48456756-48456585
172
PLXB1_HUMAN
1265-1322
58
0
-
-
1.22b
ENST00000358536
22b
ENSE00001726311
chr3:
48456450-48456208
243
PLXB1_HUMAN
1323-1403
81
0
-
-
1.23c
ENST00000358536
23c
ENSE00001731310
chr3:
48455480-48455304
177
PLXB1_HUMAN
1404-1462
59
0
-
-
1.23h
ENST00000358536
23h
ENSE00001788421
chr3:
48455227-48455079
149
PLXB1_HUMAN
1463-1512
50
0
-
-
1.23j
ENST00000358536
23j
ENSE00001633158
chr3:
48454578-48454478
101
PLXB1_HUMAN
1512-1546
35
0
-
-
1.24a
ENST00000358536
24a
ENSE00001749742
chr3:
48454368-48454151
218
PLXB1_HUMAN
1546-1618
73
0
-
-
1.25
ENST00000358536
25
ENSE00001745479
chr3:
48454029-48453851
179
PLXB1_HUMAN
1619-1678
60
0
-
-
1.26a
ENST00000358536
26a
ENSE00001731741
chr3:
48453713-48453647
67
PLXB1_HUMAN
1678-1700
23
0
-
-
1.26c
ENST00000358536
26c
ENSE00001740702
chr3:
48453418-48453272
147
PLXB1_HUMAN
1701-1749
49
0
-
-
1.27b
ENST00000358536
27b
ENSE00001769186
chr3:
48452445-48452277
169
PLXB1_HUMAN
1750-1806
57
0
-
-
1.27d
ENST00000358536
27d
ENSE00001752233
chr3:
48451967-48451864
104
PLXB1_HUMAN
1806-1840
35
0
-
-
1.28a
ENST00000358536
28a
ENSE00001597624
chr3:
48451789-48451705
85
PLXB1_HUMAN
1841-1869
29
0
-
-
1.29b
ENST00000358536
29b
ENSE00001747202
chr3:
48451486-48451314
173
PLXB1_HUMAN
1869-1926
58
0
-
-
1.30a
ENST00000358536
30a
ENSE00001685743
chr3:
48451139-48450979
161
PLXB1_HUMAN
1927-1980
54
0
-
-
1.30d
ENST00000358536
30d
ENSE00001746046
chr3:
48450884-48450737
148
PLXB1_HUMAN
1980-2029
50
0
-
-
1.31a
ENST00000358536
31a
ENSE00001798246
chr3:
48448498-48448434
65
PLXB1_HUMAN
2030-2051
22
0
-
-
1.32a
ENST00000358536
32a
ENSE00001737780
chr3:
48448305-48448230
76
PLXB1_HUMAN
2051-2076
26
0
-
-
1.33b
ENST00000358536
33b
ENSE00001624889
chr3:
48447205-48447131
75
PLXB1_HUMAN
2077-2101
25
0
-
-
1.34c
ENST00000358536
34c
ENSE00001862726
chr3:
48445997-48445263
735
PLXB1_HUMAN
2102-2135
34
1
B:90-97
8
2.1a
ENST00000397843
1a
ENSE00002172160
chr11:
120207787-120207984
198
ARHGC_HUMAN
1-11
11
0
-
-
2.3b
ENST00000397843
3b
ENSE00001364534
chr11:
120276827-120276850
24
ARHGC_HUMAN
11-19
9
0
-
-
2.4a
ENST00000397843
4a
ENSE00000990332
chr11:
120278447-120278532
86
ARHGC_HUMAN
19-48
30
1
A:1-3
3
2.4c
ENST00000397843
4c
ENSE00001530577
chr11:
120280103-120280159
57
ARHGC_HUMAN
48-67
20
1
A:4-5
2
2.5
ENST00000397843
5
ENSE00000990335
chr11:
120291462-120291560
99
ARHGC_HUMAN
67-100
34
1
A:5-38
34
2.6
ENST00000397843
6
ENSE00001125958
chr11:
120292512-120292561
50
ARHGC_HUMAN
100-116
17
1
A:38-54
17
2.7
ENST00000397843
7
ENSE00000990338
chr11:
120295067-120295124
58
ARHGC_HUMAN
117-136
20
1
A:55-74
20
2.8
ENST00000397843
8
ENSE00000990339
chr11:
120298778-120298956
179
ARHGC_HUMAN
136-195
60
1
A:74-89
16
2.9
ENST00000397843
9
ENSE00000990340
chr11:
120300149-120300226
78
ARHGC_HUMAN
196-221
26
0
-
-
2.10
ENST00000397843
10
ENSE00000990342
chr11:
120300421-120300540
120
ARHGC_HUMAN
222-261
40
0
-
-
2.11
ENST00000397843
11
ENSE00000990343
chr11:
120302480-120302620
141
ARHGC_HUMAN
262-308
47
0
-
-
2.12
ENST00000397843
12
ENSE00001205806
chr11:
120308017-120308091
75
ARHGC_HUMAN
309-333
25
0
-
-
2.13b
ENST00000397843
13b
ENSE00001205799
chr11:
120310838-120310930
93
ARHGC_HUMAN
334-364
31
0
-
-
2.14
ENST00000397843
14
ENSE00001205793
chr11:
120312416-120312526
111
ARHGC_HUMAN
365-401
37
0
-
-
2.15
ENST00000397843
15
ENSE00001205786
chr11:
120312813-120312911
99
ARHGC_HUMAN
402-434
33
0
-
-
2.16
ENST00000397843
16
ENSE00001205988
chr11:
120316131-120316173
43
ARHGC_HUMAN
435-449
15
0
-
-
2.17
ENST00000397843
17
ENSE00001205778
chr11:
120317112-120317217
106
ARHGC_HUMAN
449-484
36
0
-
-
2.18a
ENST00000397843
18a
ENSE00001125859
chr11:
120317657-120317794
138
ARHGC_HUMAN
484-530
47
0
-
-
2.19
ENST00000397843
19
ENSE00000990353
chr11:
120318583-120318615
33
ARHGC_HUMAN
530-541
12
0
-
-
2.20
ENST00000397843
20
ENSE00000990354
chr11:
120318943-120319057
115
ARHGC_HUMAN
541-579
39
0
-
-
2.21b
ENST00000397843
21b
ENSE00001205763
chr11:
120319818-120319923
106
ARHGC_HUMAN
580-615
36
0
-
-
2.22c
ENST00000397843
22c
ENSE00001125819
chr11:
120322221-120322433
213
ARHGC_HUMAN
615-686
72
0
-
-
2.23
ENST00000397843
23
ENSE00000990358
chr11:
120327827-120327959
133
ARHGC_HUMAN
686-730
45
0
-
-
2.24c
ENST00000397843
24c
ENSE00000990359
chr11:
120328430-120328465
36
ARHGC_HUMAN
730-742
13
0
-
-
2.24d
ENST00000397843
24d
ENSE00000990360
chr11:
120328789-120328943
155
ARHGC_HUMAN
742-794
53
0
-
-
2.24f
ENST00000397843
24f
ENSE00001125791
chr11:
120329883-120330029
147
ARHGC_HUMAN
794-843
50
0
-
-
2.25
ENST00000397843
25
ENSE00000990363
chr11:
120331381-120331466
86
ARHGC_HUMAN
843-871
29
0
-
-
2.26b
ENST00000397843
26b
ENSE00000990365
chr11:
120335946-120336071
126
ARHGC_HUMAN
872-913
42
0
-
-
2.27
ENST00000397843
27
ENSE00000990366
chr11:
120337903-120338017
115
ARHGC_HUMAN
914-952
39
0
-
-
2.28
ENST00000397843
28
ENSE00000990367
chr11:
120339997-120340097
101
ARHGC_HUMAN
952-985
34
0
-
-
2.29
ENST00000397843
29
ENSE00000990368
chr11:
120343759-120343836
78
ARHGC_HUMAN
986-1011
26
0
-
-
2.30
ENST00000397843
30
ENSE00001125877
chr11:
120345269-120345344
76
ARHGC_HUMAN
1012-1037
26
0
-
-
2.31
ENST00000397843
31
ENSE00001430984
chr11:
120346049-120346216
168
ARHGC_HUMAN
1037-1093
57
0
-
-
2.32b
ENST00000397843
32b
ENSE00001402131
chr11:
120347370-120347457
88
ARHGC_HUMAN
1093-1122
30
0
-
-
2.33b
ENST00000397843
33b
ENSE00001125767
chr11:
120347928-120348014
87
ARHGC_HUMAN
1122-1151
30
0
-
-
2.34a
ENST00000397843
34a
ENSE00000990377
chr11:
120348156-120348235
80
ARHGC_HUMAN
1151-1178
28
0
-
-
2.35
ENST00000397843
35
ENSE00000990378
chr11:
120348865-120349098
234
ARHGC_HUMAN
1178-1256
79
0
-
-
2.36b
ENST00000397843
36b
ENSE00001125757
chr11:
120350669-120351139
471
ARHGC_HUMAN
1256-1413
158
0
-
-
2.37
ENST00000397843
37
ENSE00001401289
chr11:
120351969-120352285
317
ARHGC_HUMAN
1413-1518
106
0
-
-
2.38
ENST00000397843
38
ENSE00001369958
chr11:
120355147-120355216
70
ARHGC_HUMAN
1519-1542
24
0
-
-
2.39b
ENST00000397843
39b
ENSE00001364735
chr11:
120355776-120360645
4870
ARHGC_HUMAN
1542-1544
3
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2os6A00 (A:1-89)
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
2os6A00
A:1-89
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_PDZ_2os6A01 (A:11-83)
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Clan
:
PDZ-like
(184)
Family
:
PDZ
(172)
Homo sapiens (Human)
(96)
1a
PDZ-2os6A01
A:11-83
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