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2OQ0
Biol. Unit 4
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Asym.Unit (136 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (35 KB)
Biol.Unit 4 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FIRST HIN-200 DOMAIN OF INTERFERON-INDUCIBLE PROTEIN 16
Authors
:
R. Lam, J. C. C. Liao, M. Ravichandran, J. Ma, W. Tempel, N. Y. Chirgadze, C. H. Arrowsmith, Northeast Structural Genomics Consortium (Ne
Date
:
30 Jan 07 (Deposition) - 27 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Ob Folds, Beta-Barrels, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Protein Binding
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Reference
:
J. C. C. Liao, R. Lam, M. Ravichandran, J. Ma, W. Tempel, N. Y. Chirgadze C. H. Arrowsmith
Crystal Structure Of The First Hin-200 Domain Of Interferon-Inducible Protein 16
To Be Published
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Hetero Components
(1, 6)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
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No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
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Sites
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_029488 (K15E, chain D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029488
K
202
E
IF16_HUMAN
Polymorphism
11585341
D
K
15
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2oq0a1 (A:115-202)
1b: SCOP_d2oq0a2 (A:12-114)
1c: SCOP_d2oq0b1 (B:115-203)
1d: SCOP_d2oq0b2 (B:12-114)
1e: SCOP_d2oq0c1 (C:115-202)
1f: SCOP_d2oq0c2 (C:11-114)
1g: SCOP_d2oq0d1 (D:115-203)
1h: SCOP_d2oq0d2 (D:13-114)
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Protein Domains
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Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
HIN-2000 domain-like
(11)
Family
:
HIN-200/IF120x domain
(5)
Protein domain
:
Gamma-interferon-inducible protein Ifi-16
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2oq0a1
A:115-202
1b
d2oq0a2
A:12-114
1c
d2oq0b1
B:115-203
1d
d2oq0b2
B:12-114
1e
d2oq0c1
C:115-202
1f
d2oq0c2
C:11-114
1g
d2oq0d1
D:115-203
1h
d2oq0d2
D:13-114
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2oq0C01 (C:11-113)
1b: CATH_2oq0B01 (B:12-113)
1c: CATH_2oq0A01 (A:12-113)
1d: CATH_2oq0D01 (D:13-113)
1e: CATH_2oq0B02 (B:114-203)
1f: CATH_2oq0D02 (D:114-203)
1g: CATH_2oq0A02 (A:114-202)
1h: CATH_2oq0C02 (C:114-202)
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Organisms
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Human (Homo sapiens)
(27)
1a
2oq0C01
C:11-113
1b
2oq0B01
B:12-113
1c
2oq0A01
A:12-113
1d
2oq0D01
D:13-113
1e
2oq0B02
B:114-203
1f
2oq0D02
D:114-203
1g
2oq0A02
A:114-202
1h
2oq0C02
C:114-202
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_HIN_2oq0D01 (D:14-183)
1b: PFAM_HIN_2oq0D02 (D:14-183)
1c: PFAM_HIN_2oq0D03 (D:14-183)
1d: PFAM_HIN_2oq0D04 (D:14-183)
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Clan
:
no clan defined [family: HIN]
(1)
Family
:
HIN
(1)
Homo sapiens (Human)
(1)
1a
HIN-2oq0D01
D:14-183
1b
HIN-2oq0D02
D:14-183
1c
HIN-2oq0D03
D:14-183
1d
HIN-2oq0D04
D:14-183
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Chain D
Asymmetric Unit 1
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Asym.Unit (136 KB)
Header - Asym.Unit
Biol.Unit 1 (35 KB)
Header - Biol.Unit 1
Biol.Unit 2 (35 KB)
Header - Biol.Unit 2
Biol.Unit 3 (35 KB)
Header - Biol.Unit 3
Biol.Unit 4 (34 KB)
Header - Biol.Unit 4
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