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2OQ0
Asym. Unit
Info
Asym.Unit (136 KB)
Biol.Unit 1 (35 KB)
Biol.Unit 2 (35 KB)
Biol.Unit 3 (35 KB)
Biol.Unit 4 (34 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE FIRST HIN-200 DOMAIN OF INTERFERON-INDUCIBLE PROTEIN 16
Authors
:
R. Lam, J. C. C. Liao, M. Ravichandran, J. Ma, W. Tempel, N. Y. Chirgadze, C. H. Arrowsmith, Northeast Structural Genomics Consortium (Ne
Date
:
30 Jan 07 (Deposition) - 27 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Ob Folds, Beta-Barrels, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. C. C. Liao, R. Lam, M. Ravichandran, J. Ma, W. Tempel, N. Y. Chirgadze C. H. Arrowsmith
Crystal Structure Of The First Hin-200 Domain Of Interferon-Inducible Protein 16
To Be Published
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Hetero Components
(2, 24)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
MSE
23
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN C:141 , GLN C:142
BINDING SITE FOR RESIDUE CL C 207
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SAPs(SNPs)/Variants
(1, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_029488 (K15E, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_029488
K
202
E
IF16_HUMAN
Polymorphism
11585341
A/B/C/D
K
15
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(3, 12)
Info
All Exons
Exon 1.8b (A:12-137 (gaps) | B:12-137 | C:11-...)
Exon 1.9 (A:138-200 | B:138-200 | C:138-200 ...)
Exon 1.10 (A:201-202 | B:201-203 | C:201-202 ...)
View:
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All Exon Boundaries
1: Boundary 1.7b/1.8b
2: Boundary 1.8b/1.9
3: Boundary 1.9/1.10
4: Boundary 1.10/1.11
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4c
ENST00000295809
4c
ENSE00001446388
chr1:
158979712-158979951
240
IF16_HUMAN
-
0
0
-
-
1.5
ENST00000295809
5
ENSE00002197956
chr1:
158984451-158984735
285
IF16_HUMAN
1-89
89
0
-
-
1.6b
ENST00000295809
6b
ENSE00002145190
chr1:
158985662-158985777
116
IF16_HUMAN
89-127
39
0
-
-
1.7b
ENST00000295809
7b
ENSE00001713738
chr1:
158986323-158986490
168
IF16_HUMAN
128-183
56
0
-
-
1.8b
ENST00000295809
8b
ENSE00001756224
chr1:
158988019-158988441
423
IF16_HUMAN
184-324
141
4
A:12-137 (gaps)
B:12-137
C:11-137
D:13-137 (gaps)
126
126
127
125
1.9
ENST00000295809
9
ENSE00001745832
chr1:
158990131-158990319
189
IF16_HUMAN
325-387
63
4
A:138-200
B:138-200
C:138-200
D:138-200
63
63
63
63
1.10
ENST00000295809
10
ENSE00001775551
chr1:
159002314-159002481
168
IF16_HUMAN
388-443
56
4
A:201-202
B:201-203
C:201-202
D:201-203
2
3
2
3
1.11
ENST00000295809
11
ENSE00001604845
chr1:
159015087-159015254
168
IF16_HUMAN
444-499
56
0
-
-
1.12
ENST00000295809
12
ENSE00001647098
chr1:
159019222-159019389
168
IF16_HUMAN
500-555
56
0
-
-
1.13a
ENST00000295809
13a
ENSE00001285404
chr1:
159021469-159021888
420
IF16_HUMAN
556-695
140
0
-
-
1.13e
ENST00000295809
13e
ENSE00001076041
chr1:
159023323-159023514
192
IF16_HUMAN
696-759
64
0
-
-
1.14b
ENST00000295809
14b
ENSE00001285450
chr1:
159024611-159024938
328
IF16_HUMAN
760-785
26
0
-
-
[
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SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2oq0a1 (A:115-202)
1b: SCOP_d2oq0a2 (A:12-114)
1c: SCOP_d2oq0b1 (B:115-203)
1d: SCOP_d2oq0b2 (B:12-114)
1e: SCOP_d2oq0c1 (C:115-202)
1f: SCOP_d2oq0c2 (C:11-114)
1g: SCOP_d2oq0d1 (D:115-203)
1h: SCOP_d2oq0d2 (D:13-114)
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Classes
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Folds
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
HIN-2000 domain-like
(11)
Family
:
HIN-200/IF120x domain
(5)
Protein domain
:
Gamma-interferon-inducible protein Ifi-16
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2oq0a1
A:115-202
1b
d2oq0a2
A:12-114
1c
d2oq0b1
B:115-203
1d
d2oq0b2
B:12-114
1e
d2oq0c1
C:115-202
1f
d2oq0c2
C:11-114
1g
d2oq0d1
D:115-203
1h
d2oq0d2
D:13-114
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2oq0C01 (C:11-113)
1b: CATH_2oq0B01 (B:12-113)
1c: CATH_2oq0A01 (A:12-113)
1d: CATH_2oq0D01 (D:13-113)
1e: CATH_2oq0B02 (B:114-203)
1f: CATH_2oq0D02 (D:114-203)
1g: CATH_2oq0A02 (A:114-202)
1h: CATH_2oq0C02 (C:114-202)
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(
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
Nucleic acid-binding proteins
(483)
Human (Homo sapiens)
(27)
1a
2oq0C01
C:11-113
1b
2oq0B01
B:12-113
1c
2oq0A01
A:12-113
1d
2oq0D01
D:13-113
1e
2oq0B02
B:114-203
1f
2oq0D02
D:114-203
1g
2oq0A02
A:114-202
1h
2oq0C02
C:114-202
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_HIN_2oq0D01 (D:14-183)
1b: PFAM_HIN_2oq0D02 (D:14-183)
1c: PFAM_HIN_2oq0D03 (D:14-183)
1d: PFAM_HIN_2oq0D04 (D:14-183)
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Clans
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(
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Organisms
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)
(
)
Clan
:
no clan defined [family: HIN]
(1)
Family
:
HIN
(1)
Homo sapiens (Human)
(1)
1a
HIN-2oq0D01
D:14-183
1b
HIN-2oq0D02
D:14-183
1c
HIN-2oq0D03
D:14-183
1d
HIN-2oq0D04
D:14-183
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