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2OPW
Asym. Unit
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Asym.Unit (53 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN PHYTANOYL-COA DIOXYGENASE PHYHD1 (APO)
Authors
:
Z. Zhang, D. Butler, M. A. Mcdonough, K. L. Kavanagh, J. E. Bray, S. S. Ng, Delft, C. H. Arrowsmith, J. Weigelt, A. Edwards, M. Sundstrom, C. J. Sc U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
30 Jan 07 (Deposition) - 06 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Phyhd1, Double-Stranded Beta Helix, Oxygenase, Structural Genomics, Structural Genomics Consortium, Sgc, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Zhang, D. Butler, M. A. Mcdonough, K. L. Kavanagh, J. E. Bray, S. S. Ng F. Von Delft, C. H. Arrowsmith, J. Weigelt, A. Edwards, M. Sundstrom, C. J. Schofield, U. Oppermann
Crystal Structure Of Human Phytanoyl-Coa Dioxygenase Phyhd1 (Apo)
To Be Published
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_050529 (R222W, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_050529
R
222
W
PHYD1_HUMAN
Polymorphism
10988159
A
R
222
W
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(11, 11)
Info
All Exons
Exon 1.3a (A:2-11)
Exon 1.4b (A:12-64)
Exon 1.5c (A:65-90)
Exon 1.6a (A:90-106)
Exon 1.7 (A:106-124)
Exon 1.8 (A:125-145)
Exon 1.9b (A:146-153)
Exon 1.10b (A:153-196)
Exon 1.10e (A:196-235 (gaps))
Exon 1.11a (A:235-277)
Exon 1.11d (A:277-291)
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All Exon Boundaries
01: Boundary 1.2b/1.3a
02: Boundary 1.3a/1.4b
03: Boundary 1.4b/1.5c
04: Boundary 1.5c/1.6a
05: Boundary 1.6a/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9b
08: Boundary 1.9b/1.10b
09: Boundary 1.10b/1.10e
10: Boundary 1.10e/1.11a
11: Boundary 1.11a/1.11d
12: Boundary 1.11d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000372592
1a
ENSE00001404383
chr9:
131683174-131683947
774
PHYD1_HUMAN
-
0
0
-
-
1.2b
ENST00000372592
2b
ENSE00001426496
chr9:
131684209-131684326
118
PHYD1_HUMAN
-
0
0
-
-
1.3a
ENST00000372592
3a
ENSE00001412360
chr9:
131684562-131684635
74
PHYD1_HUMAN
1-11
11
1
A:2-11
10
1.4b
ENST00000372592
4b
ENSE00002172845
chr9:
131689317-131689475
159
PHYD1_HUMAN
12-64
53
1
A:12-64
53
1.5c
ENST00000372592
5c
ENSE00001622652
chr9:
131696061-131696136
76
PHYD1_HUMAN
65-90
26
1
A:65-90
26
1.6a
ENST00000372592
6a
ENSE00001653906
chr9:
131696290-131696337
48
PHYD1_HUMAN
90-106
17
1
A:90-106
17
1.7
ENST00000372592
7
ENSE00001591889
chr9:
131698727-131698782
56
PHYD1_HUMAN
106-124
19
1
A:106-124
19
1.8
ENST00000372592
8
ENSE00001744807
chr9:
131698862-131698924
63
PHYD1_HUMAN
125-145
21
1
A:125-145
21
1.9b
ENST00000372592
9b
ENSE00001673454
chr9:
131700036-131700057
22
PHYD1_HUMAN
146-153
8
1
A:146-153
8
1.10b
ENST00000372592
10b
ENSE00001757060
chr9:
131702648-131702776
129
PHYD1_HUMAN
153-196
44
1
A:153-196
44
1.10e
ENST00000372592
10e
ENSE00001619664
chr9:
131702878-131702994
117
PHYD1_HUMAN
196-235
40
1
A:196-235 (gaps)
40
1.11a
ENST00000372592
11a
ENSE00001776873
chr9:
131703724-131703850
127
PHYD1_HUMAN
235-277
43
1
A:235-277
43
1.11d
ENST00000372592
11d
ENSE00001853182
chr9:
131703947-131704316
370
PHYD1_HUMAN
277-291
15
1
A:277-291
15
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_PhyH_2opwA01 (A:12-259)
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Clan
:
Cupin
(179)
Family
:
PhyH
(5)
Homo sapiens (Human)
(2)
1a
PhyH-2opwA01
A:12-259
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Asymmetric Unit 1
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