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Asym.Unit (26 KB)
Biol.Unit 1 (22 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE UBA DOMAIN FROM CBL-B UBIQUITIN LIGASE IN COMPLEX WITH UBIQUITIN
Authors
:
G. Kozlov, K. Gehring
Date
:
25 Jan 07 (Deposition) - 06 Feb 07 (Release) - 05 Aug 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Protein Complex, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Peschard, G. Kozlov, T. Lin, I. A. Mirza, A. M. Berghuis, S. Lipkowitz, M. Park, K. Gehring
Structural Basis For Ubiquitin-Mediated Dimerization And Activation Of The Ubiquitin Protein Ligase Cbl-B.
Mol. Cell V. 27 474 2007
(for further references see the
PDB file header
)
[
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]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (B:1-72,B:1-72,-|-|-|B:1-72,-|-|-|-...)
2: UBIQUITIN_1 (B:27-52,B:27-52,-|-|-|B:27-52,-|-|...)
3: UBA (A:931-970)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RS27A_BOVIN
1-76
1
B:1-72
RL40_BOVIN
1-76
1
B:1-72
UBB_BOVIN
1-76
77-152
153-228
229-304
1
-
-
-
B:1-72
UBC_BOVIN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
1
-
-
-
-
-
-
-
-
B:1-72
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RS27A_BOVIN
27-52
1
B:27-52
RL40_BOVIN
27-52
1
B:27-52
UBB_BOVIN
27-52
103-128
179-204
255-280
1
-
-
-
B:27-52
UBC_BOVIN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
1
-
-
-
-
-
-
-
-
B:27-52
3
UBA
PS50030
Ubiquitin-associated domain (UBA) profile.
CBLB_HUMAN
931-970
1
A:931-970
[
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]
Exons
(1, 1)
Info
All Exons
Exon 1.19d (A:929-972)
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All Exon Boundaries
1: Boundary 1.18b/1.19d
2: Boundary 1.19d/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2d
ENST00000264122
2d
ENSE00001340691
chr3:
105587887-105587580
308
CBLB_HUMAN
-
0
0
-
-
1.3
ENST00000264122
3
ENSE00002109512
chr3:
105586435-105586254
182
CBLB_HUMAN
1-56
56
0
-
-
1.4
ENST00000264122
4
ENSE00002192869
chr3:
105572508-105572258
251
CBLB_HUMAN
57-140
84
0
-
-
1.5
ENST00000264122
5
ENSE00001686511
chr3:
105495386-105495240
147
CBLB_HUMAN
140-189
50
0
-
-
1.6
ENST00000264122
6
ENSE00001628201
chr3:
105470462-105470306
157
CBLB_HUMAN
189-241
53
0
-
-
1.7
ENST00000264122
7
ENSE00001692048
chr3:
105464882-105464761
122
CBLB_HUMAN
242-282
41
0
-
-
1.8
ENST00000264122
8
ENSE00001696958
chr3:
105459475-105459338
138
CBLB_HUMAN
282-328
47
0
-
-
1.9
ENST00000264122
9
ENSE00001616258
chr3:
105456102-105456015
88
CBLB_HUMAN
328-357
30
0
-
-
1.10
ENST00000264122
10
ENSE00001694160
chr3:
105452984-105452853
132
CBLB_HUMAN
358-401
44
0
-
-
1.11
ENST00000264122
11
ENSE00001654827
chr3:
105439094-105438891
204
CBLB_HUMAN
402-469
68
0
-
-
1.12
ENST00000264122
12
ENSE00001767402
chr3:
105423017-105422832
186
CBLB_HUMAN
470-531
62
0
-
-
1.13a
ENST00000264122
13a
ENSE00001607504
chr3:
105421303-105420938
366
CBLB_HUMAN
532-653
122
0
-
-
1.14
ENST00000264122
14
ENSE00000774846
chr3:
105412432-105412338
95
CBLB_HUMAN
654-685
32
0
-
-
1.15
ENST00000264122
15
ENSE00000774845
chr3:
105404310-105404164
147
CBLB_HUMAN
685-734
50
0
-
-
1.16b
ENST00000264122
16b
ENSE00000774844
chr3:
105400662-105400568
95
CBLB_HUMAN
734-766
33
0
-
-
1.16d
ENST00000264122
16d
ENSE00000774843
chr3:
105400454-105400323
132
CBLB_HUMAN
766-810
45
0
-
-
1.17
ENST00000264122
17
ENSE00000774842
chr3:
105397415-105397275
141
CBLB_HUMAN
810-857
48
0
-
-
1.18b
ENST00000264122
18b
ENSE00000774841
chr3:
105389196-105389077
120
CBLB_HUMAN
857-897
41
0
-
-
1.19d
ENST00000264122
19d
ENSE00001755904
chr3:
105378073-105374305
3769
CBLB_HUMAN
897-982
86
1
A:929-972
44
[
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2oobb_ (B:)
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(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Cow (Bos taurus) [TaxId: 9913]
(24)
1a
d2oobb_
B:
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2oobB00 (B:1-72)
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(
)
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)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
2oobB00
B:1-72
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_UBA_2oobA01 (A:931-967)
2a: PFAM_ubiquitin_2oobB01 (B:6-72)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
UBA
(32)
Family
:
UBA
(23)
Homo sapiens (Human)
(13)
1a
UBA-2oobA01
A:931-967
Clan
:
Ubiquitin
(279)
Family
:
ubiquitin
(99)
Bos taurus (Bovine)
(12)
2a
ubiquitin-2oobB01
B:6-72
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