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2ON5
Biol. Unit 2
Info
Asym.Unit (324 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (84 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (82 KB)
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(1)
Title
:
STRUCTURE OF NAGST-2
Authors
:
O. A. Asojo, M. Ngamelue, H. Homma, G. Goud, B. Zhan, P. J. Hotez
Date
:
23 Jan 07 (Deposition) - 07 Aug 07 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,G (1x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: D,F (1x)
Biol. Unit 4: E,H (1x)
Keywords
:
Gst; Hookworm; Necator, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. A. Asojo, K. Homma, M. Sedlacek, M. Ngamelue, G. N. Goud, B. Zhan, V. Deumic, O. Asojo, P. J. Hotez
X-Ray Structures Of Na-Gst-1 And Na-Gst-2 Two Glutathione S-Transferase From The Human Hookworm Necator Americanus
Bmc Struct. Biol. V. 7 42 2007
[
close entry info
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Hetero Components
(2, 21)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1aj: 1,2-ETHANEDIOL (EDOaj)
1ak: 1,2-ETHANEDIOL (EDOak)
1al: 1,2-ETHANEDIOL (EDOal)
1am: 1,2-ETHANEDIOL (EDOam)
1an: 1,2-ETHANEDIOL (EDOan)
1ao: 1,2-ETHANEDIOL (EDOao)
1ap: 1,2-ETHANEDIOL (EDOap)
1aq: 1,2-ETHANEDIOL (EDOaq)
1ar: 1,2-ETHANEDIOL (EDOar)
1as: 1,2-ETHANEDIOL (EDOas)
1at: 1,2-ETHANEDIOL (EDOat)
1au: 1,2-ETHANEDIOL (EDOau)
1av: 1,2-ETHANEDIOL (EDOav)
1aw: 1,2-ETHANEDIOL (EDOaw)
1ax: 1,2-ETHANEDIOL (EDOax)
1ay: 1,2-ETHANEDIOL (EDOay)
1az: 1,2-ETHANEDIOL (EDOaz)
1b: 1,2-ETHANEDIOL (EDOb)
1ba: 1,2-ETHANEDIOL (EDOba)
1bb: 1,2-ETHANEDIOL (EDObb)
1bc: 1,2-ETHANEDIOL (EDObc)
1bd: 1,2-ETHANEDIOL (EDObd)
1be: 1,2-ETHANEDIOL (EDObe)
1bf: 1,2-ETHANEDIOL (EDObf)
1bg: 1,2-ETHANEDIOL (EDObg)
1bh: 1,2-ETHANEDIOL (EDObh)
1bi: 1,2-ETHANEDIOL (EDObi)
1bj: 1,2-ETHANEDIOL (EDObj)
1bk: 1,2-ETHANEDIOL (EDObk)
1bl: 1,2-ETHANEDIOL (EDObl)
1bm: 1,2-ETHANEDIOL (EDObm)
1bn: 1,2-ETHANEDIOL (EDObn)
1bo: 1,2-ETHANEDIOL (EDObo)
1bp: 1,2-ETHANEDIOL (EDObp)
1bq: 1,2-ETHANEDIOL (EDObq)
1br: 1,2-ETHANEDIOL (EDObr)
1bs: 1,2-ETHANEDIOL (EDObs)
1bt: 1,2-ETHANEDIOL (EDObt)
1bu: 1,2-ETHANEDIOL (EDObu)
1bv: 1,2-ETHANEDIOL (EDObv)
1bw: 1,2-ETHANEDIOL (EDObw)
1bx: 1,2-ETHANEDIOL (EDObx)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GLUTATHIONE (GSHa)
2b: GLUTATHIONE (GSHb)
2c: GLUTATHIONE (GSHc)
2d: GLUTATHIONE (GSHd)
2e: GLUTATHIONE (GSHe)
2f: GLUTATHIONE (GSHf)
2g: GLUTATHIONE (GSHg)
2h: GLUTATHIONE (GSHh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
19
Ligand/Ion
1,2-ETHANEDIOL
2
GSH
2
Ligand/Ion
GLUTATHIONE
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: BC6 (SOFTWARE)
02: BC7 (SOFTWARE)
03: BC8 (SOFTWARE)
04: BC9 (SOFTWARE)
05: CC1 (SOFTWARE)
06: CC2 (SOFTWARE)
07: CC3 (SOFTWARE)
08: CC4 (SOFTWARE)
09: CC5 (SOFTWARE)
10: CC6 (SOFTWARE)
11: CC7 (SOFTWARE)
12: CC8 (SOFTWARE)
13: CC9 (SOFTWARE)
14: DC1 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC3 (SOFTWARE)
17: DC4 (SOFTWARE)
18: DC5 (SOFTWARE)
19: DC6 (SOFTWARE)
20: DC7 (SOFTWARE)
21: FC2 (SOFTWARE)
22: HC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
BC6
SOFTWARE
ARG B:129 , GLU B:130
BINDING SITE FOR RESIDUE EDO B 419
02
BC7
SOFTWARE
PHE B:9 , ALA B:10 , TYR B:34 , THR B:35 , PHE B:36
BINDING SITE FOR RESIDUE EDO B 420
03
BC8
SOFTWARE
LYS B:205 , HOH B:1195
BINDING SITE FOR RESIDUE EDO B 421
04
BC9
SOFTWARE
TYR B:105 , VAL B:109 , GLY B:166 , ILE B:167 , LYS B:205 , HOH B:1081 , HOH B:1104
BINDING SITE FOR RESIDUE EDO B 422
05
CC1
SOFTWARE
ARG B:107 , VAL B:112 , GSH B:999
BINDING SITE FOR RESIDUE EDO B 423
06
CC2
SOFTWARE
GSH B:999 , HOH B:1244
BINDING SITE FOR RESIDUE EDO B 424
07
CC3
SOFTWARE
LEU B:14 , PRO B:17 , SER B:64 , PHE B:65 , EDO B:426
BINDING SITE FOR RESIDUE EDO B 425
08
CC4
SOFTWARE
LEU B:14 , PHE B:65 , TYR B:95 , EDO B:425 , HOH B:1114 , HOH B:1151 , HOH B:1184
BINDING SITE FOR RESIDUE EDO B 426
09
CC5
SOFTWARE
TYR B:29 , TRP B:197 , HOH B:1125 , HOH B:1185
BINDING SITE FOR RESIDUE EDO B 427
10
CC6
SOFTWARE
ALA B:25 , GLY B:26 , GLN B:27
BINDING SITE FOR RESIDUE EDO B 428
11
CC7
SOFTWARE
GLN B:37 , HOH B:1039 , HOH B:1099 , HOH B:1213 , HOH E:1079
BINDING SITE FOR RESIDUE EDO B 430
12
CC8
SOFTWARE
LYS B:138 , PHE B:139 , LYS B:142 , HOH B:1108 , HOH B:1153 , HOH C:1085
BINDING SITE FOR RESIDUE EDO B 452
13
CC9
SOFTWARE
GLN B:60 , HOH B:1034 , HOH B:1049 , HOH B:1072 , HOH B:1124 , EDO C:452
BINDING SITE FOR RESIDUE EDO B 453
14
DC1
SOFTWARE
TYR B:8 , PHE B:9 , LEU B:14 , TRP B:39 , LYS B:43 , GLN B:50 , ILE B:51 , GLN B:63 , SER B:64 , EDO B:423 , EDO B:424 , HOH B:1001 , ASP C:97
BINDING SITE FOR RESIDUE GSH B 999
15
DC2
SOFTWARE
GLN C:37 , PRO C:40 , HOH C:1210 , ARG G:107 , VAL G:112 , ASP G:113
BINDING SITE FOR RESIDUE EDO C 424
16
DC3
SOFTWARE
LEU C:14 , PRO C:17 , ILE C:18 , SER C:64 , PHE C:65 , CYS C:159 , HOH C:1117
BINDING SITE FOR RESIDUE EDO C 425
17
DC4
SOFTWARE
TYR C:29 , TRP C:197 , HOH C:1120
BINDING SITE FOR RESIDUE EDO C 427
18
DC5
SOFTWARE
ALA C:25 , GLY C:26 , GLN C:27 , HOH C:1041
BINDING SITE FOR RESIDUE EDO C 428
19
DC6
SOFTWARE
EDO B:453 , HOH B:1124 , LYS C:138 , PHE C:139 , LYS C:142 , HOH C:1233
BINDING SITE FOR RESIDUE EDO C 452
20
DC7
SOFTWARE
ASP B:97 , TYR C:8 , PHE C:9 , LEU C:14 , TRP C:39 , LYS C:43 , GLN C:50 , ILE C:51 , GLN C:63 , SER C:64 , HOH C:1022
BINDING SITE FOR RESIDUE GSH C 999
21
FC2
SOFTWARE
LYS B:41 , HOH B:1039 , TYR E:29 , ASP E:31 , TRP E:197 , HOH E:1050 , HOH E:1079
BINDING SITE FOR RESIDUE EDO E 427
22
HC3
SOFTWARE
GLN C:114 , ALA G:10 , THR G:204 , LYS G:205 , HOH G:1122 , HOH G:1221
BINDING SITE FOR RESIDUE EDO G 420
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2on5a2 (A:78-206)
1b: SCOP_d2on5b2 (B:78-206)
1c: SCOP_d2on5c2 (C:78-206)
1d: SCOP_d2on5d2 (D:78-206)
1e: SCOP_d2on5e2 (E:78-206)
1f: SCOP_d2on5f2 (F:78-206)
1g: SCOP_d2on5g2 (G:78-206)
1h: SCOP_d2on5h2 (H:78-206)
2a: SCOP_d2on5a1 (A:1-77)
2b: SCOP_d2on5b1 (B:1-77)
2c: SCOP_d2on5c1 (C:1-77)
2d: SCOP_d2on5d1 (D:1-77)
2e: SCOP_d2on5e1 (E:1-77)
2f: SCOP_d2on5f1 (F:1-77)
2g: SCOP_d2on5g1 (G:1-77)
2h: SCOP_d2on5h1 (H:1-77)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Necator americanus [TaxId: 51031]
(3)
1a
d2on5a2
A:78-206
1b
d2on5b2
B:78-206
1c
d2on5c2
C:78-206
1d
d2on5d2
D:78-206
1e
d2on5e2
E:78-206
1f
d2on5f2
F:78-206
1g
d2on5g2
G:78-206
1h
d2on5h2
H:78-206
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Necator americanus [TaxId: 51031]
(3)
2a
d2on5a1
A:1-77
2b
d2on5b1
B:1-77
2c
d2on5c1
C:1-77
2d
d2on5d1
D:1-77
2e
d2on5e1
E:1-77
2f
d2on5f1
F:1-77
2g
d2on5g1
G:1-77
2h
d2on5h1
H:1-77
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2on5A01 (A:1-75,A:191-206)
1b: CATH_2on5B01 (B:1-75,B:191-206)
1c: CATH_2on5C01 (C:1-75,C:191-206)
1d: CATH_2on5D01 (D:1-75,D:191-206)
1e: CATH_2on5E01 (E:1-75,E:191-206)
1f: CATH_2on5F01 (F:1-75,F:191-206)
1g: CATH_2on5G01 (G:1-75,G:191-206)
1h: CATH_2on5H01 (H:1-75,H:191-206)
View:
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Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Necator americanus. Organism_taxid: 51031.
(2)
1a
2on5A01
A:1-75,A:191-206
1b
2on5B01
B:1-75,B:191-206
1c
2on5C01
C:1-75,C:191-206
1d
2on5D01
D:1-75,D:191-206
1e
2on5E01
E:1-75,E:191-206
1f
2on5F01
F:1-75,F:191-206
1g
2on5G01
G:1-75,G:191-206
1h
2on5H01
H:1-75,H:191-206
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
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Asym.Unit (324 KB)
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