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2ON5
Biol. Unit 1
Info
Asym.Unit (324 KB)
Biol.Unit 1 (84 KB)
Biol.Unit 2 (84 KB)
Biol.Unit 3 (83 KB)
Biol.Unit 4 (82 KB)
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(1)
Title
:
STRUCTURE OF NAGST-2
Authors
:
O. A. Asojo, M. Ngamelue, H. Homma, G. Goud, B. Zhan, P. J. Hotez
Date
:
23 Jan 07 (Deposition) - 07 Aug 07 (Release) - 21 Mar 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,G (1x)
Biol. Unit 2: B,C (1x)
Biol. Unit 3: D,F (1x)
Biol. Unit 4: E,H (1x)
Keywords
:
Gst; Hookworm; Necator, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
O. A. Asojo, K. Homma, M. Sedlacek, M. Ngamelue, G. N. Goud, B. Zhan, V. Deumic, O. Asojo, P. J. Hotez
X-Ray Structures Of Na-Gst-1 And Na-Gst-2 Two Glutathione S-Transferase From The Human Hookworm Necator Americanus
Bmc Struct. Biol. V. 7 42 2007
[
close entry info
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Hetero Components
(2, 22)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1aj: 1,2-ETHANEDIOL (EDOaj)
1ak: 1,2-ETHANEDIOL (EDOak)
1al: 1,2-ETHANEDIOL (EDOal)
1am: 1,2-ETHANEDIOL (EDOam)
1an: 1,2-ETHANEDIOL (EDOan)
1ao: 1,2-ETHANEDIOL (EDOao)
1ap: 1,2-ETHANEDIOL (EDOap)
1aq: 1,2-ETHANEDIOL (EDOaq)
1ar: 1,2-ETHANEDIOL (EDOar)
1as: 1,2-ETHANEDIOL (EDOas)
1at: 1,2-ETHANEDIOL (EDOat)
1au: 1,2-ETHANEDIOL (EDOau)
1av: 1,2-ETHANEDIOL (EDOav)
1aw: 1,2-ETHANEDIOL (EDOaw)
1ax: 1,2-ETHANEDIOL (EDOax)
1ay: 1,2-ETHANEDIOL (EDOay)
1az: 1,2-ETHANEDIOL (EDOaz)
1b: 1,2-ETHANEDIOL (EDOb)
1ba: 1,2-ETHANEDIOL (EDOba)
1bb: 1,2-ETHANEDIOL (EDObb)
1bc: 1,2-ETHANEDIOL (EDObc)
1bd: 1,2-ETHANEDIOL (EDObd)
1be: 1,2-ETHANEDIOL (EDObe)
1bf: 1,2-ETHANEDIOL (EDObf)
1bg: 1,2-ETHANEDIOL (EDObg)
1bh: 1,2-ETHANEDIOL (EDObh)
1bi: 1,2-ETHANEDIOL (EDObi)
1bj: 1,2-ETHANEDIOL (EDObj)
1bk: 1,2-ETHANEDIOL (EDObk)
1bl: 1,2-ETHANEDIOL (EDObl)
1bm: 1,2-ETHANEDIOL (EDObm)
1bn: 1,2-ETHANEDIOL (EDObn)
1bo: 1,2-ETHANEDIOL (EDObo)
1bp: 1,2-ETHANEDIOL (EDObp)
1bq: 1,2-ETHANEDIOL (EDObq)
1br: 1,2-ETHANEDIOL (EDObr)
1bs: 1,2-ETHANEDIOL (EDObs)
1bt: 1,2-ETHANEDIOL (EDObt)
1bu: 1,2-ETHANEDIOL (EDObu)
1bv: 1,2-ETHANEDIOL (EDObv)
1bw: 1,2-ETHANEDIOL (EDObw)
1bx: 1,2-ETHANEDIOL (EDObx)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GLUTATHIONE (GSHa)
2b: GLUTATHIONE (GSHb)
2c: GLUTATHIONE (GSHc)
2d: GLUTATHIONE (GSHd)
2e: GLUTATHIONE (GSHe)
2f: GLUTATHIONE (GSHf)
2g: GLUTATHIONE (GSHg)
2h: GLUTATHIONE (GSHh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
20
Ligand/Ion
1,2-ETHANEDIOL
2
GSH
2
Ligand/Ion
GLUTATHIONE
[
close Hetero Component info
]
Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: DC2 (SOFTWARE)
16: DC8 (SOFTWARE)
17: EC4 (SOFTWARE)
18: HC3 (SOFTWARE)
19: HC4 (SOFTWARE)
20: HC5 (SOFTWARE)
21: HC6 (SOFTWARE)
22: HC7 (SOFTWARE)
23: HC8 (SOFTWARE)
24: HC9 (SOFTWARE)
25: IC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:129 , GLU A:130
BINDING SITE FOR RESIDUE EDO A 419
02
AC2
SOFTWARE
PHE A:9 , ALA A:10 , TYR A:34 , THR A:35 , PHE A:36
BINDING SITE FOR RESIDUE EDO A 420
03
AC3
SOFTWARE
HOH A:1214
BINDING SITE FOR RESIDUE EDO A 421
04
AC4
SOFTWARE
TYR A:105 , VAL A:109 , GLY A:166 , ILE A:167 , LYS A:205 , HOH A:1135 , HOH A:1176
BINDING SITE FOR RESIDUE EDO A 422
05
AC5
SOFTWARE
GSH A:999 , HOH A:1133
BINDING SITE FOR RESIDUE EDO A 423
06
AC6
SOFTWARE
ALA A:110 , GSH A:999
BINDING SITE FOR RESIDUE EDO A 424
07
AC7
SOFTWARE
LEU A:14 , ILE A:18 , SER A:64 , CYS A:159 , EDO A:426
BINDING SITE FOR RESIDUE EDO A 425
08
AC8
SOFTWARE
LEU A:14 , PHE A:65 , TYR A:95 , EDO A:425 , HOH A:1102 , HOH A:1178 , HOH A:1197
BINDING SITE FOR RESIDUE EDO A 426
09
AC9
SOFTWARE
TYR A:29 , ASP A:31 , TRP A:197 , HOH A:1166
BINDING SITE FOR RESIDUE EDO A 427
10
BC1
SOFTWARE
ALA A:25 , GLY A:26 , GLN A:27
BINDING SITE FOR RESIDUE EDO A 428
11
BC2
SOFTWARE
GLN A:37 , HOH A:1041 , HOH A:1069 , HOH A:1112 , HOH A:1221
BINDING SITE FOR RESIDUE EDO A 429
12
BC3
SOFTWARE
LYS A:138 , PHE A:139 , LYS A:142 , HOH A:1113 , HOH G:1148
BINDING SITE FOR RESIDUE EDO A 452
13
BC4
SOFTWARE
ASP A:44 , GLU A:45 , MET A:46 , PRO A:47 , GLN A:60 , EDO G:452
BINDING SITE FOR RESIDUE EDO A 454
14
BC5
SOFTWARE
TYR A:8 , PHE A:9 , LEU A:14 , TRP A:39 , LYS A:43 , GLN A:50 , ILE A:51 , GLN A:63 , SER A:64 , EDO A:423 , EDO A:424 , HOH A:1002 , ASP G:97
BINDING SITE FOR RESIDUE GSH A 999
15
DC2
SOFTWARE
GLN C:37 , PRO C:40 , HOH C:1210 , ARG G:107 , VAL G:112 , ASP G:113
BINDING SITE FOR RESIDUE EDO C 424
16
DC8
SOFTWARE
ARG A:33 , TYR A:34 , HOH A:1087 , HIS D:3 , GLU D:30 , HOH D:1011 , HOH D:1047
BINDING SITE FOR RESIDUE EDO D 418
17
EC4
SOFTWARE
LYS A:41 , HOH A:1069 , TYR D:29 , ASP D:31 , TRP D:197 , HOH D:1070
BINDING SITE FOR RESIDUE EDO D 427
18
HC3
SOFTWARE
GLN C:114 , ALA G:10 , THR G:204 , LYS G:205 , HOH G:1122 , HOH G:1221
BINDING SITE FOR RESIDUE EDO G 420
19
HC4
SOFTWARE
LEU G:106 , VAL G:109 , ALA G:110 , HOH G:1063
BINDING SITE FOR RESIDUE EDO G 422
20
HC5
SOFTWARE
LEU G:14 , PRO G:17 , ILE G:18 , SER G:64 , PHE G:65 , EDO G:426
BINDING SITE FOR RESIDUE EDO G 425
21
HC6
SOFTWARE
GLY G:13 , LEU G:14 , PRO G:17 , TYR G:95 , ILE G:99 , EDO G:425 , HOH G:1023 , HOH G:1076 , HOH G:1085 , HOH G:1185
BINDING SITE FOR RESIDUE EDO G 426
22
HC7
SOFTWARE
TYR G:29 , TRP G:197 , HOH G:1097
BINDING SITE FOR RESIDUE EDO G 427
23
HC8
SOFTWARE
LEU G:87 , LYS G:142 , HOH G:1017 , HOH G:1041 , HOH G:1100 , HOH G:1104 , HOH G:1197
BINDING SITE FOR RESIDUE EDO G 450
24
HC9
SOFTWARE
EDO A:454 , LYS G:142 , HOH G:1034
BINDING SITE FOR RESIDUE EDO G 452
25
IC1
SOFTWARE
ASP A:97 , TYR G:8 , PHE G:9 , LEU G:14 , TRP G:39 , LYS G:43 , GLN G:50 , ILE G:51 , GLN G:63 , SER G:64 , HOH G:1234
BINDING SITE FOR RESIDUE GSH G 999
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2on5a2 (A:78-206)
1b: SCOP_d2on5b2 (B:78-206)
1c: SCOP_d2on5c2 (C:78-206)
1d: SCOP_d2on5d2 (D:78-206)
1e: SCOP_d2on5e2 (E:78-206)
1f: SCOP_d2on5f2 (F:78-206)
1g: SCOP_d2on5g2 (G:78-206)
1h: SCOP_d2on5h2 (H:78-206)
2a: SCOP_d2on5a1 (A:1-77)
2b: SCOP_d2on5b1 (B:1-77)
2c: SCOP_d2on5c1 (C:1-77)
2d: SCOP_d2on5d1 (D:1-77)
2e: SCOP_d2on5e1 (E:1-77)
2f: SCOP_d2on5f1 (F:1-77)
2g: SCOP_d2on5g1 (G:1-77)
2h: SCOP_d2on5h1 (H:1-77)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
GST C-terminal domain-like
(353)
Superfamily
:
GST C-terminal domain-like
(353)
Family
:
automated matches
(86)
Protein domain
:
automated matches
(86)
Necator americanus [TaxId: 51031]
(3)
1a
d2on5a2
A:78-206
1b
d2on5b2
B:78-206
1c
d2on5c2
C:78-206
1d
d2on5d2
D:78-206
1e
d2on5e2
E:78-206
1f
d2on5f2
F:78-206
1g
d2on5g2
G:78-206
1h
d2on5h2
H:78-206
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Thioredoxin fold
(994)
Superfamily
:
Thioredoxin-like
(992)
Family
:
automated matches
(347)
Protein domain
:
automated matches
(347)
Necator americanus [TaxId: 51031]
(3)
2a
d2on5a1
A:1-77
2b
d2on5b1
B:1-77
2c
d2on5c1
C:1-77
2d
d2on5d1
D:1-77
2e
d2on5e1
E:1-77
2f
d2on5f1
F:1-77
2g
d2on5g1
G:1-77
2h
d2on5h1
H:1-77
[
close SCOP info
]
CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2on5A01 (A:1-75,A:191-206)
1b: CATH_2on5B01 (B:1-75,B:191-206)
1c: CATH_2on5C01 (C:1-75,C:191-206)
1d: CATH_2on5D01 (D:1-75,D:191-206)
1e: CATH_2on5E01 (E:1-75,E:191-206)
1f: CATH_2on5F01 (F:1-75,F:191-206)
1g: CATH_2on5G01 (G:1-75,G:191-206)
1h: CATH_2on5H01 (H:1-75,H:191-206)
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Classes
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Architectures
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Glutaredoxin
(620)
Homologous Superfamily
:
Glutaredoxin
(617)
Necator americanus. Organism_taxid: 51031.
(2)
1a
2on5A01
A:1-75,A:191-206
1b
2on5B01
B:1-75,B:191-206
1c
2on5C01
C:1-75,C:191-206
1d
2on5D01
D:1-75,D:191-206
1e
2on5E01
E:1-75,E:191-206
1f
2on5F01
F:1-75,F:191-206
1g
2on5G01
G:1-75,G:191-206
1h
2on5H01
H:1-75,H:191-206
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
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Asymmetric Unit 1
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