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2OM1
Biol. Unit 2
Info
Asym.Unit (177 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (60 KB)
Biol.Unit 3 (57 KB)
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(1)
Title
:
STRUCTURE OF HUMAN INSULIN IN PRESENCE OF THIOCYANATE AT PH 6.5
Authors
:
M. Norrman, G. Schluckebier
Date
:
20 Jan 07 (Deposition) - 04 Dec 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.97
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,Q,R,S,T,U,V,X,Y,a,b,c,d,e,f,g,h,i,j,k,l,1,2,3,4
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: Q,R,S,T,U,V,X,Y,1,2,3,4 (1x)
Biol. Unit 3: a,b,c,d,e,f,g,h,i,j,k,l (1x)
Keywords
:
R6 Conformation, Hormone
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Norrman, G. Schluckebier
Crystallographic Characterization Of Two Novel Crystal Form Of Human Insulin Induced By Chaotropic Agents And A Shift I Ph.
Bmc Struct. Biol. V. 7 83 2007
[
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Hetero Components
(3, 9)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: RESORCINOL (RCOa)
2b: RESORCINOL (RCOb)
2c: RESORCINOL (RCOc)
2d: RESORCINOL (RCOd)
2e: RESORCINOL (RCOe)
2f: RESORCINOL (RCOf)
2g: RESORCINOL (RCOg)
2h: RESORCINOL (RCOh)
2i: RESORCINOL (RCOi)
2j: RESORCINOL (RCOj)
2k: RESORCINOL (RCOk)
2l: RESORCINOL (RCOl)
2m: RESORCINOL (RCOm)
2n: RESORCINOL (RCOn)
2o: RESORCINOL (RCOo)
2p: RESORCINOL (RCOp)
2q: RESORCINOL (RCOq)
2r: RESORCINOL (RCOr)
3a: THIOCYANATE ION (SCNa)
3b: THIOCYANATE ION (SCNb)
3c: THIOCYANATE ION (SCNc)
3d: THIOCYANATE ION (SCNd)
3e: THIOCYANATE ION (SCNe)
3f: THIOCYANATE ION (SCNf)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
RCO
6
Ligand/Ion
RESORCINOL
3
SCN
2
Ligand/Ion
THIOCYANATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(11, 11)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC9 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC4 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC9 (SOFTWARE)
08: CC1 (SOFTWARE)
09: CC2 (SOFTWARE)
10: CC9 (SOFTWARE)
11: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
HIS R:10 , SCN R:903 , HIS T:10 , HIS V:10
BINDING SITE FOR RESIDUE ZN R 803
02
AC4
SOFTWARE
HIS 2:10 , HIS 4:10 , HIS Y:10 , SCN Y:904
BINDING SITE FOR RESIDUE ZN Y 804
03
AC9
SOFTWARE
HIS R:10 , ZN R:803 , LEU T:6 , HIS T:10 , LEU V:6 , HIS V:10
BINDING SITE FOR RESIDUE SCN R 903
04
BC1
SOFTWARE
HIS 2:10 , HIS 4:10 , HIS Y:10 , ZN Y:804
BINDING SITE FOR RESIDUE SCN Y 904
05
BC4
SOFTWARE
HIS R:5 , CYS U:6 , SER U:9 , ILE U:10 , CYS U:11 , HOH U:1003 , LEU V:11 , LEU Y:17
BINDING SITE FOR RESIDUE RCO U 1001
06
BC6
SOFTWARE
LEU 2:17 , CYS Q:6 , SER Q:9 , ILE Q:10 , CYS Q:11 , HOH Q:1021 , LEU R:11 , ALA R:14 , HIS T:5
BINDING SITE FOR RESIDUE RCO Q 1003
07
BC9
SOFTWARE
HIS 2:5 , CYS 3:6 , SER 3:9 , ILE 3:10 , CYS 3:11 , HOH 3:1018 , LEU 4:11 , ALA 4:14 , LEU T:17
BINDING SITE FOR RESIDUE RCO 3 1006
08
CC1
SOFTWARE
CYS 1:6 , SER 1:9 , ILE 1:10 , CYS 1:11 , HOH 1:1011 , LEU 2:11 , ALA 2:14 , LEU R:17 , HIS Y:5
BINDING SITE FOR RESIDUE RCO 1 1007
09
CC2
SOFTWARE
LEU 4:17 , CYS S:6 , SER S:9 , ILE S:10 , CYS S:11 , HOH S:1016 , HOH S:1025 , LEU T:11 , ALA T:14
BINDING SITE FOR RESIDUE RCO S 1008
10
CC9
SOFTWARE
HIS 4:5 , LEU V:17 , CYS X:6 , SER X:9 , ILE X:10 , CYS X:11 , HOH X:1016 , HOH X:1034 , LEU Y:11 , ALA Y:14
BINDING SITE FOR RESIDUE RCO X 1015
11
DC4
SOFTWARE
THR Q:8 , SER Q:9 , PHE T:1 , HOH T:1104 , HOH T:1113 , HOH T:1117 , HOH T:1125 , HOH T:1132 , ASN c:18
BINDING SITE FOR RESIDUE GOL T 1101
[
close Site info
]
SAPs(SNPs)/Variants
(18, 108)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_063736 (G1C, chain 1/3/Q/S/U/X, )
02: VAR_003976 (V3L, chain 1/3/Q/S/U/X, )
03: VAR_063724 (H5D, chain 2/4/R/T/V/Y, )
04: VAR_063737 (C7S, chain 1/3/Q/S/U/X, )
05: VAR_063738 (C7Y, chain 1/3/Q/S/U/X, )
06: VAR_063725 (G8R, chain 2/4/R/T/V/Y, )
07: VAR_063726 (G8S, chain 2/4/R/T/V/Y, )
08: VAR_003971 (H10D, chain 2/4/R/T/V/Y, )
09: VAR_063727 (L11P, chain 2/4/R/T/V/Y, )
10: VAR_063739 (S12C, chain 1/3/Q/S/U/X, )
11: VAR_063740 (Y14C, chain 1/3/Q/S/U/X, )
12: VAR_063741 (Y19C, chain 1/3/Q/S/U/X, )
13: VAR_063728 (C19G, chain 2/4/R/T/V/Y, )
14: VAR_063729 (R22Q, chain 2/4/R/T/V/Y, )
15: VAR_063730 (G23V, chain 2/4/R/T/V/Y, )
16: VAR_063731 (F24C, chain 2/4/R/T/V/Y, )
17: VAR_003972 (F24S, chain 2/4/R/T/V/Y, )
18: VAR_003973 (F25L, chain 2/4/R/T/V/Y, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_063736
G
90
C
INS_HUMAN
Disease (PNDM)
80356670
1/3/Q/S/U/X
G
1
C
02
UniProt
VAR_003976
V
92
L
INS_HUMAN
Unclassified
---
1/3/Q/S/U/X
V
3
L
03
UniProt
VAR_063724
H
29
D
INS_HUMAN
Disease (PNDM)
121908272
2/4/R/T/V/Y
H
5
D
04
UniProt
VAR_063737
C
96
S
INS_HUMAN
Disease (PNDM)
80356671
1/3/Q/S/U/X
C
7
S
05
UniProt
VAR_063738
C
96
Y
INS_HUMAN
Disease (PNDM)
80356671
1/3/Q/S/U/X
C
7
Y
06
UniProt
VAR_063725
G
32
R
INS_HUMAN
Disease (PNDM)
80356664
2/4/R/T/V/Y
G
8
R
07
UniProt
VAR_063726
G
32
S
INS_HUMAN
Disease (PNDM)
80356664
2/4/R/T/V/Y
G
8
S
08
UniProt
VAR_003971
H
34
D
INS_HUMAN
Disease (HPRI)
---
2/4/R/T/V/Y
H
10
D
09
UniProt
VAR_063727
L
35
P
INS_HUMAN
Disease (PNDM)
121908273
2/4/R/T/V/Y
L
11
P
10
UniProt
VAR_063739
S
101
C
INS_HUMAN
Disease (PNDM)
121908276
1/3/Q/S/U/X
S
12
C
11
UniProt
VAR_063740
Y
103
C
INS_HUMAN
Disease (PNDM)
121908277
1/3/Q/S/U/X
Y
14
C
12
UniProt
VAR_063741
Y
108
C
INS_HUMAN
Disease (PNDM)
80356672
1/3/Q/S/U/X
Y
19
C
13
UniProt
VAR_063728
C
43
G
INS_HUMAN
Disease (PNDM)
80356666
2/4/R/T/V/Y
C
19
G
14
UniProt
VAR_063729
R
46
Q
INS_HUMAN
Disease (MODY10)
121908260
2/4/R/T/V/Y
R
22
Q
15
UniProt
VAR_063730
G
47
V
INS_HUMAN
Disease (PNDM)
80356667
2/4/R/T/V/Y
G
23
V
16
UniProt
VAR_063731
F
48
C
INS_HUMAN
Disease (PNDM)
80356668
2/4/R/T/V/Y
F
24
C
17
UniProt
VAR_003972
F
48
S
INS_HUMAN
Unclassified
---
2/4/R/T/V/Y
F
24
S
18
UniProt
VAR_003973
F
49
L
INS_HUMAN
Unclassified
---
2/4/R/T/V/Y
F
25
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: INSULIN (1:6-20,3:6-20,Q:6-20,S:6-20,U:6-20...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
INSULIN
PS00262
Insulin family signature.
INS_HUMAN
95-109
6
1:6-20
3:6-20
-
-
-
-
-
-
Q:6-20
S:6-20
U:6-20
X:6-20
-
-
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2om121 (2:1-29)
1b: SCOP_d2om141 (4:1-29)
1c: SCOP_d2om1b1 (B:1-29)
1d: SCOP_d2om1d1 (D:1-29)
1e: SCOP_d2om1f1 (F:1-29)
1f: SCOP_d2om1h1 (H:1-29)
1g: SCOP_d2om1j1 (J:1-29)
1h: SCOP_d2om1l1 (L:1-29)
1i: SCOP_d2om1r1 (R:1-29)
1j: SCOP_d2om1t1 (T:1-29)
1k: SCOP_d2om1v1 (V:1-29)
1l: SCOP_d2om1y1 (Y:1-29)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Peptides
(792)
Fold
:
Isolated insulin B-chain
(18)
Superfamily
:
Isolated insulin B-chain
(18)
Family
:
Isolated insulin B-chain
(18)
Protein domain
:
Isolated insulin B-chain
(18)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d2om121
2:1-29
1b
d2om141
4:1-29
1c
d2om1b1
B:1-29
1d
d2om1d1
D:1-29
1e
d2om1f1
F:1-29
1f
d2om1h1
H:1-29
1g
d2om1j1
J:1-29
1h
d2om1l1
L:1-29
1i
d2om1r1
R:1-29
1j
d2om1t1
T:1-29
1k
d2om1v1
V:1-29
1l
d2om1y1
Y:1-29
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(1, 36)
Info
all PFAM domains
1a: PFAM_Insulin_2om1Y01 (Y:4-29)
1b: PFAM_Insulin_2om1Y02 (Y:4-29)
1c: PFAM_Insulin_2om1Y03 (Y:4-29)
1d: PFAM_Insulin_2om1Y04 (Y:4-29)
1e: PFAM_Insulin_2om1Y05 (Y:4-29)
1f: PFAM_Insulin_2om1Y06 (Y:4-29)
1g: PFAM_Insulin_2om1Y07 (Y:4-29)
1h: PFAM_Insulin_2om1Y08 (Y:4-29)
1i: PFAM_Insulin_2om1Y09 (Y:4-29)
1j: PFAM_Insulin_2om1Y10 (Y:4-29)
1k: PFAM_Insulin_2om1Y11 (Y:4-29)
1l: PFAM_Insulin_2om1Y12 (Y:4-29)
1m: PFAM_Insulin_2om1Y13 (Y:4-29)
1n: PFAM_Insulin_2om1Y14 (Y:4-29)
1o: PFAM_Insulin_2om1Y15 (Y:4-29)
1p: PFAM_Insulin_2om1Y16 (Y:4-29)
1q: PFAM_Insulin_2om1Y17 (Y:4-29)
1r: PFAM_Insulin_2om1Y18 (Y:4-29)
1s: PFAM_Insulin_2om1Y19 (Y:4-29)
1t: PFAM_Insulin_2om1Y20 (Y:4-29)
1u: PFAM_Insulin_2om1Y21 (Y:4-29)
1v: PFAM_Insulin_2om1Y22 (Y:4-29)
1w: PFAM_Insulin_2om1Y23 (Y:4-29)
1x: PFAM_Insulin_2om1Y24 (Y:4-29)
1y: PFAM_Insulin_2om1Y25 (Y:4-29)
1z: PFAM_Insulin_2om1Y26 (Y:4-29)
1aa: PFAM_Insulin_2om1Y27 (Y:4-29)
1ab: PFAM_Insulin_2om1Y28 (Y:4-29)
1ac: PFAM_Insulin_2om1Y29 (Y:4-29)
1ad: PFAM_Insulin_2om1Y30 (Y:4-29)
1ae: PFAM_Insulin_2om1Y31 (Y:4-29)
1af: PFAM_Insulin_2om1Y32 (Y:4-29)
1ag: PFAM_Insulin_2om1Y33 (Y:4-29)
1ah: PFAM_Insulin_2om1Y34 (Y:4-29)
1ai: PFAM_Insulin_2om1Y35 (Y:4-29)
1aj: PFAM_Insulin_2om1Y36 (Y:4-29)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Insulin
(93)
Family
:
Insulin
(92)
Homo sapiens (Human)
(79)
1a
Insulin-2om1Y01
Y:4-29
1b
Insulin-2om1Y02
Y:4-29
1c
Insulin-2om1Y03
Y:4-29
1d
Insulin-2om1Y04
Y:4-29
1e
Insulin-2om1Y05
Y:4-29
1f
Insulin-2om1Y06
Y:4-29
1g
Insulin-2om1Y07
Y:4-29
1h
Insulin-2om1Y08
Y:4-29
1i
Insulin-2om1Y09
Y:4-29
1j
Insulin-2om1Y10
Y:4-29
1k
Insulin-2om1Y11
Y:4-29
1l
Insulin-2om1Y12
Y:4-29
1m
Insulin-2om1Y13
Y:4-29
1n
Insulin-2om1Y14
Y:4-29
1o
Insulin-2om1Y15
Y:4-29
1p
Insulin-2om1Y16
Y:4-29
1q
Insulin-2om1Y17
Y:4-29
1r
Insulin-2om1Y18
Y:4-29
1s
Insulin-2om1Y19
Y:4-29
1t
Insulin-2om1Y20
Y:4-29
1u
Insulin-2om1Y21
Y:4-29
1v
Insulin-2om1Y22
Y:4-29
1w
Insulin-2om1Y23
Y:4-29
1x
Insulin-2om1Y24
Y:4-29
1y
Insulin-2om1Y25
Y:4-29
1z
Insulin-2om1Y26
Y:4-29
1aa
Insulin-2om1Y27
Y:4-29
1ab
Insulin-2om1Y28
Y:4-29
1ac
Insulin-2om1Y29
Y:4-29
1ad
Insulin-2om1Y30
Y:4-29
1ae
Insulin-2om1Y31
Y:4-29
1af
Insulin-2om1Y32
Y:4-29
1ag
Insulin-2om1Y33
Y:4-29
1ah
Insulin-2om1Y34
Y:4-29
1ai
Insulin-2om1Y35
Y:4-29
1aj
Insulin-2om1Y36
Y:4-29
[
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