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2OBY
Asym. Unit
Info
Asym.Unit (252 KB)
Biol.Unit 1 (100 KB)
Biol.Unit 2 (101 KB)
Biol.Unit 3 (101 KB)
Biol.Unit 4 (101 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN P53 INDUCIBLE OXIDOREDUCTASE (TP53I3,PIG3)
Authors
:
S. Porte, E. Valencia, J. Farres, I. Fita, A. C. W. Pike, N. Shafqat, J. De C. Johansson, A. Haroniti, O. Gileadi, C. H. Arrowsmith, A. Edwards, J M. Sundstrom, F. Von Delft, U. Oppermann, X. Pares
Date
:
20 Dec 06 (Deposition) - 30 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C (2x)
Biol. Unit 3: D (2x)
Biol. Unit 4: E (2x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Porte, E. Valencia, J. Farres, I. Fita, A. C. W. Pike, N. Shafqat, J. Debreczeni, C. Johansson, A. Haroniti, O. Gileadi, C. H. Arrowsmith, A. Edwards, J. Weigelt, M. Sundstrom, F. Von Delft, U. Oppermann, X. Pares
Crystal Structure Of Human P53 Inducible Oxidoreductase (Tp53I3, Pig3)
To Be Published
[
close entry info
]
Hetero Components
(1, 5)
Info
All Hetero Components
1a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
1b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
1c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
1d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
1e: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAP
5
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASN A:40 , ARG A:41 , GLU A:123 , THR A:127 , ALA A:148 , SER A:151 , GLY A:152 , VAL A:153 , ALA A:172 , GLY A:173 , LYS A:177 , TYR A:192 , ILE A:217 , TYR A:221 , TYR A:238 , GLY A:239 , MET A:241 , GLY A:242 , SER A:264 , LEU A:265 , LEU A:266 , MET A:317 , ASN A:320 , ASN A:322
BINDING SITE FOR RESIDUE NAP A 1400
2
AC2
SOFTWARE
ASN B:40 , ARG B:41 , GLU B:123 , THR B:127 , ALA B:148 , SER B:151 , GLY B:152 , VAL B:153 , ALA B:172 , GLY B:173 , LYS B:177 , TYR B:192 , ILE B:217 , TYR B:238 , MET B:241 , SER B:264 , LEU B:265 , LEU B:266 , MET B:317 , ASN B:322
BINDING SITE FOR RESIDUE NAP B 1401
3
AC3
SOFTWARE
ARG C:41 , GLU C:123 , THR C:127 , ALA C:148 , SER C:151 , GLY C:152 , VAL C:153 , ALA C:172 , GLY C:173 , LYS C:177 , TYR C:192 , ILE C:217 , TYR C:221 , TYR C:238 , MET C:241 , SER C:264 , LEU C:266 , MET C:317 , ASN C:322
BINDING SITE FOR RESIDUE NAP C 1402
4
AC4
SOFTWARE
ASN D:40 , ARG D:41 , GLU D:123 , THR D:127 , ALA D:148 , SER D:151 , GLY D:152 , VAL D:153 , ALA D:172 , GLY D:173 , LYS D:177 , TYR D:192 , TYR D:221 , TYR D:238 , MET D:241 , SER D:264 , LEU D:265 , LEU D:266 , MET D:317 , ASN D:320 , ASN D:322
BINDING SITE FOR RESIDUE NAP D 1403
5
AC5
SOFTWARE
ASN E:40 , ARG E:41 , GLU E:123 , THR E:127 , ALA E:148 , SER E:151 , GLY E:152 , VAL E:153 , ALA E:172 , GLY E:173 , LYS E:177 , TYR E:192 , ILE E:217 , TYR E:221 , TYR E:238 , MET E:241 , SER E:264 , LEU E:265 , LEU E:266 , MET E:317 , ASN E:320 , ASN E:322
BINDING SITE FOR RESIDUE NAP E 1404
[
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]
SAPs(SNPs)/Variants
(2, 10)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_033032 (M180K, chain A/B/C/D/E, )
2: VAR_048201 (E223K, chain A/B/C/D/E, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_033032
M
180
K
QORX_HUMAN
Unclassified
---
A/B/C/D/E
M
180
K
2
UniProt
VAR_048201
E
223
K
QORX_HUMAN
Polymorphism
35176319
A/B/C/D/E
E
223
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
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Exons
(5, 25)
Info
All Exons
Exon 1.2f (A:1-46 | B:1-46 | C:1-46 | D:1-46 ...)
Exon 1.3b (A:47-136 | B:47-136 | C:47-136 | D...)
Exon 1.4a (A:136-207 | B:136-207 | C:136-207 ...)
Exon 1.5b (A:207-272 | B:207-272 | C:207-272 ...)
Exon 1.6d (A:273-332 | B:273-332 | C:273-332 ...)
View:
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All Exon Boundaries
1: Boundary 1.2a/1.2f
2: Boundary 1.2f/1.3b
3: Boundary 1.3b/1.4a
4: Boundary 1.4a/1.5b
5: Boundary 1.5b/1.6d
6: Boundary 1.6d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000335934
2a
ENSE00001850009
chr2:
24308085-24307601
485
QORX_HUMAN
-
0
0
-
-
1.2f
ENST00000335934
2f
ENSE00001347001
chr2:
24307201-24307059
143
QORX_HUMAN
1-46
46
5
A:1-46
B:1-46
C:1-46
D:1-46
E:1-46
46
46
46
46
46
1.3b
ENST00000335934
3b
ENSE00000721478
chr2:
24306022-24305755
268
QORX_HUMAN
47-136
90
5
A:47-136
B:47-136
C:47-136
D:47-136
E:47-136
90
90
90
90
90
1.4a
ENST00000335934
4a
ENSE00001690893
chr2:
24303901-24303689
213
QORX_HUMAN
136-207
72
5
A:136-207
B:136-207
C:136-207
D:136-207
E:136-207
72
72
72
72
72
1.5b
ENST00000335934
5b
ENSE00000721466
chr2:
24302510-24302314
197
QORX_HUMAN
207-272
66
5
A:207-272
B:207-272
C:207-272
D:207-272
E:207-272
66
66
66
66
66
1.6d
ENST00000335934
6d
ENSE00001743570
chr2:
24300631-24300303
329
QORX_HUMAN
273-332
60
5
A:273-332
B:273-332
C:273-332
D:273-332
E:273-332
60
60
60
60
60
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(2, 10)
Info
all PFAM domains
1a: PFAM_ADH_N_2obyE01 (E:27-97)
1b: PFAM_ADH_N_2obyE02 (E:27-97)
1c: PFAM_ADH_N_2obyE03 (E:27-97)
1d: PFAM_ADH_N_2obyE04 (E:27-97)
1e: PFAM_ADH_N_2obyE05 (E:27-97)
2a: PFAM_ADH_zinc_N_2obyE06 (E:152-282)
2b: PFAM_ADH_zinc_N_2obyE07 (E:152-282)
2c: PFAM_ADH_zinc_N_2obyE08 (E:152-282)
2d: PFAM_ADH_zinc_N_2obyE09 (E:152-282)
2e: PFAM_ADH_zinc_N_2obyE10 (E:152-282)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GroES
(70)
Family
:
ADH_N
(62)
Homo sapiens (Human)
(18)
1a
ADH_N-2obyE01
E:27-97
1b
ADH_N-2obyE02
E:27-97
1c
ADH_N-2obyE03
E:27-97
1d
ADH_N-2obyE04
E:27-97
1e
ADH_N-2obyE05
E:27-97
Clan
:
NADP_Rossmann
(1239)
Family
:
ADH_zinc_N
(75)
Homo sapiens (Human)
(24)
2a
ADH_zinc_N-2obyE06
E:152-282
2b
ADH_zinc_N-2obyE07
E:152-282
2c
ADH_zinc_N-2obyE08
E:152-282
2d
ADH_zinc_N-2obyE09
E:152-282
2e
ADH_zinc_N-2obyE10
E:152-282
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