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2O9C
Asym. Unit
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Asym.Unit (68 KB)
Biol.Unit 1 (115 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF BACTERIOPHYTOCHROME CHROMOPHORE BINDING DOMAIN AT 1.45 ANGSTROM RESOLUTION
Authors
:
J. R Wagner, J. S. Brunzelle, R. D. Vierstra, K. T. Forest
Date
:
13 Dec 06 (Deposition) - 06 Mar 07 (Release) - 28 Sep 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Phytochrome Chromophore, Figure-Of-Eight Knot, Phytochromobilin, Biliverdin, Pas, Gaf, Transferase
(Keyword Search:
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Reference
:
J. R. Wagner, J. Zhang, J. S. Brunzelle, R. D. Vierstra, K. T. Forest
High Resolution Structure Of Deinococcus Bacteriophytochrom Yields New Insights Into Phytochrome Architecture And Evolution.
J. Biol. Chem. V. 282 12298 2007
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Hetero Components
(1, 1)
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All Hetero Components
1a: 3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(... (LBVa)
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Name
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1
LBV
1
Ligand/Ion
3-[2-[(Z)-[3-(2-CARBOXYETHYL)-5-[(Z)-(4-ETHENYL-3-METHYL-5-OXIDANYLIDENE-PYRROL-2-YLIDENE)METHYL]-4-METHYL-PYRROL-1-IUM-2-YLIDENE]METHYL]-5-[(Z)-[(3E)-3-ETHYLIDENE-4-METHYL-5-OXIDANYLIDENE-PYRROLIDIN-2-YLIDENE]METHYL]-4-METHYL-1H-PYRROL-3-YL]PROPANOIC ACID
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Sites
(1, 1)
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1: AC1 (SOFTWARE)
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1
AC1
SOFTWARE
CYS A:24 , MET A:174 , TYR A:176 , PHE A:198 , PHE A:203 , SER A:206 , ASP A:207 , ILE A:208 , PRO A:209 , TYR A:216 , ARG A:254 , THR A:256 , SER A:257 , MET A:259 , HIS A:260 , TYR A:263 , MET A:267 , SER A:272 , SER A:274 , HIS A:290 , HOH A:330 , HOH A:331 , HOH A:335 , HOH A:340 , HOH A:451 , HOH A:491
BINDING SITE FOR RESIDUE LBV A 328
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
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1: PHYTOCHROME_2 (A:152-310)
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PHYTOCHROME_2
PS50046
Phytochrome chromophore attachment site domain profile.
BPHY_DEIRA
152-310
1
A:152-310
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Exons
(0, 0)
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SCOP Domains
(2, 2)
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1a: SCOP_d2o9ca1 (A:135-322)
2a: SCOP_d2o9ca2 (A:4-130)
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Class
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Alpha and beta proteins (a+b)
(23004)
Fold
:
Profilin-like
(304)
Superfamily
:
GAF domain-like
(54)
Family
:
GAF domain
(24)
Protein domain
:
Bacteriophytochrome BphP
(8)
Deinococcus radiodurans [TaxId: 1299]
(3)
1a
d2o9ca1
A:135-322
Superfamily
:
PYP-like sensor domain (PAS domain)
(163)
Family
:
BphP N-terminal domain-like
(12)
Protein domain
:
Bacteriophytochrome BphP
(10)
Deinococcus radiodurans [TaxId: 1299]
(3)
2a
d2o9ca2
A:4-130
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CATH Domains
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Pfam Domains
(2, 2)
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all PFAM domains
1a: PFAM_GAF_2o9cA01 (A:152-316)
2a: PFAM_PAS_2_2o9cA02 (A:24-129)
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Clan
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GAF
(44)
Family
:
GAF
(30)
Deinococcus radiodurans
(3)
1a
GAF-2o9cA01
A:152-316
Clan
:
PAS_Fold
(84)
Family
:
PAS_2
(5)
Deinococcus radiodurans
(3)
2a
PAS_2-2o9cA02
A:24-129
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