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2O7U
Asym. Unit
Info
Asym.Unit (468 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (59 KB)
Biol.Unit 4 (59 KB)
Biol.Unit 5 (59 KB)
Biol.Unit 6 (59 KB)
Biol.Unit 7 (59 KB)
Biol.Unit 8 (59 KB)
Biol.Unit 9 (58 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF K206E/K296E MUTANT OF THE N-TERMINAL HALF MOLECULE OF HUMAN TRANSFERRIN
Authors
:
H. M. Baker, D. Nurizzo, A. B. Mason, E. N. Baker
Date
:
11 Dec 06 (Deposition) - 23 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: B (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Keywords
:
Human Transferrin, Iron Binding Protein, Dilysine Pair, Metal Transport
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. M. Baker, D. Nurizzo, A. B. Mason, E. N. Baker
Structures Of Two Mutants That Probe The Role In Iron Release Of The Dilysine Pair In The N-Lobe Of Human Transferrin.
Acta Crystallogr. , Sect. D V. 63 408 2007
[
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Hetero Components
(2, 18)
Info
All Hetero Components
1a: CARBONATE ION (CO3a)
1b: CARBONATE ION (CO3b)
1c: CARBONATE ION (CO3c)
1d: CARBONATE ION (CO3d)
1e: CARBONATE ION (CO3e)
1f: CARBONATE ION (CO3f)
1g: CARBONATE ION (CO3g)
1h: CARBONATE ION (CO3h)
1i: CARBONATE ION (CO3i)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
2e: FE (III) ION (FEe)
2f: FE (III) ION (FEf)
2g: FE (III) ION (FEg)
2h: FE (III) ION (FEh)
2i: FE (III) ION (FEi)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO3
9
Ligand/Ion
CARBONATE ION
2
FE
9
Ligand/Ion
FE (III) ION
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:63 , TYR B:95 , TYR B:188 , HIS B:249 , CO3 B:600
BINDING SITE FOR RESIDUE FE B 500
02
AC2
SOFTWARE
ASP B:63 , TYR B:95 , THR B:120 , ARG B:124 , ALA B:126 , GLY B:127 , TYR B:188 , HIS B:249 , FE B:500
BINDING SITE FOR RESIDUE CO3 B 600
03
AC3
SOFTWARE
ASP A:63 , TYR A:95 , TYR A:188 , HIS A:249 , CO3 A:600
BINDING SITE FOR RESIDUE FE A 500
04
AC4
SOFTWARE
ASP A:63 , TYR A:95 , THR A:120 , ARG A:124 , ALA A:126 , GLY A:127 , TYR A:188 , HIS A:249 , FE A:500
BINDING SITE FOR RESIDUE CO3 A 600
05
AC5
SOFTWARE
ASP C:63 , TYR C:95 , TYR C:188 , HIS C:249 , CO3 C:600
BINDING SITE FOR RESIDUE FE C 500
06
AC6
SOFTWARE
ASP C:63 , TYR C:95 , THR C:120 , ARG C:124 , ALA C:126 , GLY C:127 , TYR C:188 , HIS C:249 , FE C:500
BINDING SITE FOR RESIDUE CO3 C 600
07
AC7
SOFTWARE
ASP D:63 , TYR D:95 , TYR D:188 , HIS D:249 , CO3 D:600
BINDING SITE FOR RESIDUE FE D 500
08
AC8
SOFTWARE
ASP D:63 , TYR D:95 , THR D:120 , ARG D:124 , SER D:125 , ALA D:126 , GLY D:127 , TYR D:188 , HIS D:249 , FE D:500
BINDING SITE FOR RESIDUE CO3 D 600
09
AC9
SOFTWARE
ASP E:63 , TYR E:95 , TYR E:188 , HIS E:249 , CO3 E:600
BINDING SITE FOR RESIDUE FE E 500
10
BC1
SOFTWARE
ASP E:63 , TYR E:95 , THR E:120 , ARG E:124 , SER E:125 , ALA E:126 , GLY E:127 , TYR E:188 , HIS E:249 , FE E:500
BINDING SITE FOR RESIDUE CO3 E 600
11
BC2
SOFTWARE
ASP F:63 , TYR F:95 , TYR F:188 , HIS F:249 , CO3 F:600
BINDING SITE FOR RESIDUE FE F 500
12
BC3
SOFTWARE
ASP F:63 , TYR F:95 , THR F:120 , ARG F:124 , SER F:125 , ALA F:126 , GLY F:127 , TYR F:188 , HIS F:249 , FE F:500
BINDING SITE FOR RESIDUE CO3 F 600
13
BC4
SOFTWARE
ASP G:63 , TYR G:95 , TYR G:188 , HIS G:249 , CO3 G:600
BINDING SITE FOR RESIDUE FE G 500
14
BC5
SOFTWARE
ASP G:63 , TYR G:95 , THR G:120 , ARG G:124 , SER G:125 , ALA G:126 , GLY G:127 , TYR G:188 , FE G:500
BINDING SITE FOR RESIDUE CO3 G 600
15
BC6
SOFTWARE
ASP H:63 , TYR H:95 , TYR H:188 , HIS H:249 , CO3 H:600
BINDING SITE FOR RESIDUE FE H 500
16
BC7
SOFTWARE
ASP H:63 , TYR H:95 , THR H:120 , ARG H:124 , SER H:125 , ALA H:126 , GLY H:127 , TYR H:188 , HIS H:249 , FE H:500
BINDING SITE FOR RESIDUE CO3 H 600
17
BC8
SOFTWARE
ASP I:63 , TYR I:95 , TYR I:188 , HIS I:249 , CO3 I:600
BINDING SITE FOR RESIDUE FE I 500
18
BC9
SOFTWARE
ASP I:63 , TYR I:95 , THR I:120 , ARG I:124 , SER I:125 , ALA I:126 , GLY I:127 , TYR I:188 , FE I:500
BINDING SITE FOR RESIDUE CO3 I 600
[
close Site info
]
SAPs(SNPs)/Variants
(8, 72)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_034569 (R23L, chain A/B/C/D/E/F/G/H/I, )
2: VAR_029280 (S36R, chain A/B/C/D/E/F/G/H/I, )
3: VAR_034570 (A57V, chain A/B/C/D/E/F/G/H/I, )
4: VAR_038810 (D58N, chain A/B/C/D/E/F/G/H/I, )
5: VAR_011997 (G123S, chain A/B/C/D/E/F/G/H/I, )
6: VAR_011998 (G258S, chain A/B/C/D/E/F/G/H/I, )
7: VAR_007544 (D277G, chain A/B/C/D/E/F/G/H/I, )
8: VAR_007545 (H300R, chain A/B/C/D/E/F/G/H/I, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_034569
R
42
L
TRFE_HUMAN
Polymorphism
41298293
A/B/C/D/E/F/G/H/I
R
23
L
2
UniProt
VAR_029280
S
55
R
TRFE_HUMAN
Polymorphism
8177318
A/B/C/D/E/F/G/H/I
S
36
R
3
UniProt
VAR_034570
A
76
V
TRFE_HUMAN
Polymorphism
41298977
A/B/C/D/E/F/G/H/I
A
57
V
4
UniProt
VAR_038810
D
77
N
TRFE_HUMAN
Disease (ATRAF)
---
A/B/C/D/E/F/G/H/I
D
58
N
5
UniProt
VAR_011997
G
142
S
TRFE_HUMAN
Polymorphism
1799830
A/B/C/D/E/F/G/H/I
G
123
S
6
UniProt
VAR_011998
G
277
S
TRFE_HUMAN
Polymorphism
1799899
A/B/C/D/E/F/G/H/I
G
258
S
7
UniProt
VAR_007544
D
296
G
TRFE_HUMAN
Polymorphism
8177238
A/B/C/D/E/F/G/H/I
D
277
G
8
UniProt
VAR_007545
H
319
R
TRFE_HUMAN
Polymorphism
41295774
A/B/C/D/E/F/G/H/I
H
300
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(4, 36)
Info
All PROSITE Patterns/Profiles
1: TRANSFERRIN_LIKE_4 (A:6-328,B:6-328,C:6-328,D:6-328,E:...)
2: TRANSFERRIN_LIKE_1 (A:95-104,B:95-104,C:95-104,D:95-10...)
3: TRANSFERRIN_LIKE_2 (A:188-204,B:188-204,C:188-204,D:18...)
4: TRANSFERRIN_LIKE_3 (A:222-252,B:222-252,C:222-252,D:22...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TRANSFERRIN_LIKE_4
PS51408
Transferrin-like domain profile.
TRFE_HUMAN
25-347
361-683
9
A:6-328
B:6-328
C:6-328
D:6-328
E:6-328
F:6-328
G:6-328
H:6-328
I:6-328
-
2
TRANSFERRIN_LIKE_1
PS00205
Transferrin-like domain signature 1.
TRFE_HUMAN
114-123
9
A:95-104
B:95-104
C:95-104
D:95-104
E:95-104
F:95-104
G:95-104
H:95-104
I:95-104
3
TRANSFERRIN_LIKE_2
PS00206
Transferrin-like domain signature 2.
TRFE_HUMAN
207-223
536-551
9
A:188-204
B:188-204
C:188-204
D:188-204
E:188-204
F:188-204
G:188-204
H:188-204
I:188-204
-
4
TRANSFERRIN_LIKE_3
PS00207
Transferrin-like domain signature 3.
TRFE_HUMAN
241-271
577-607
9
A:222-252
B:222-252
C:222-252
D:222-252
E:222-252
F:222-252
G:222-252
H:222-252
I:222-252
-
[
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]
Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 9)
Info
All SCOP Domains
1a: SCOP_d2o7ua_ (A:)
1b: SCOP_d2o7ui_ (I:)
1c: SCOP_d2o7ub_ (B:)
1d: SCOP_d2o7uc_ (C:)
1e: SCOP_d2o7ud_ (D:)
1f: SCOP_d2o7ue_ (E:)
1g: SCOP_d2o7uf_ (F:)
1h: SCOP_d2o7ug_ (G:)
1i: SCOP_d2o7uh_ (H:)
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)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Transferrin
(82)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2o7ua_
A:
1b
d2o7ui_
I:
1c
d2o7ub_
B:
1d
d2o7uc_
C:
1e
d2o7ud_
D:
1f
d2o7ue_
E:
1g
d2o7uf_
F:
1h
d2o7ug_
G:
1i
d2o7uh_
H:
[
close SCOP info
]
CATH Domains
(1, 18)
Info
all CATH domains
1a: CATH_2o7uA01 (A:3-84,A:250-331)
1b: CATH_2o7uB01 (B:3-84,B:250-331)
1c: CATH_2o7uC01 (C:3-84,C:250-331)
1d: CATH_2o7uD01 (D:3-84,D:250-331)
1e: CATH_2o7uE01 (E:3-84,E:250-331)
1f: CATH_2o7uF01 (F:3-84,F:250-331)
1g: CATH_2o7uG01 (G:3-84,G:250-331)
1h: CATH_2o7uH01 (H:3-84,H:250-331)
1i: CATH_2o7uI01 (I:3-84,I:250-331)
1j: CATH_2o7uA02 (A:85-249)
1k: CATH_2o7uB02 (B:85-249)
1l: CATH_2o7uC02 (C:85-249)
1m: CATH_2o7uD02 (D:85-249)
1n: CATH_2o7uE02 (E:85-249)
1o: CATH_2o7uF02 (F:85-249)
1p: CATH_2o7uG02 (G:85-249)
1q: CATH_2o7uH02 (H:85-249)
1r: CATH_2o7uI02 (I:85-249)
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Classes
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)
(
)
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(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Human (Homo sapiens)
(55)
1a
2o7uA01
A:3-84,A:250-331
1b
2o7uB01
B:3-84,B:250-331
1c
2o7uC01
C:3-84,C:250-331
1d
2o7uD01
D:3-84,D:250-331
1e
2o7uE01
E:3-84,E:250-331
1f
2o7uF01
F:3-84,F:250-331
1g
2o7uG01
G:3-84,G:250-331
1h
2o7uH01
H:3-84,H:250-331
1i
2o7uI01
I:3-84,I:250-331
1j
2o7uA02
A:85-249
1k
2o7uB02
B:85-249
1l
2o7uC02
C:85-249
1m
2o7uD02
D:85-249
1n
2o7uE02
E:85-249
1o
2o7uF02
F:85-249
1p
2o7uG02
G:85-249
1q
2o7uH02
H:85-249
1r
2o7uI02
I:85-249
[
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]
Pfam Domains
(1, 9)
Info
all PFAM domains
1a: PFAM_Transferrin_2o7uI01 (I:6-328)
1b: PFAM_Transferrin_2o7uI02 (I:6-328)
1c: PFAM_Transferrin_2o7uI03 (I:6-328)
1d: PFAM_Transferrin_2o7uI04 (I:6-328)
1e: PFAM_Transferrin_2o7uI05 (I:6-328)
1f: PFAM_Transferrin_2o7uI06 (I:6-328)
1g: PFAM_Transferrin_2o7uI07 (I:6-328)
1h: PFAM_Transferrin_2o7uI08 (I:6-328)
1i: PFAM_Transferrin_2o7uI09 (I:6-328)
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Organisms
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)
Clan
:
PBP
(391)
Family
:
Transferrin
(53)
Homo sapiens (Human)
(23)
1a
Transferrin-2o7uI01
I:6-328
1b
Transferrin-2o7uI02
I:6-328
1c
Transferrin-2o7uI03
I:6-328
1d
Transferrin-2o7uI04
I:6-328
1e
Transferrin-2o7uI05
I:6-328
1f
Transferrin-2o7uI06
I:6-328
1g
Transferrin-2o7uI07
I:6-328
1h
Transferrin-2o7uI08
I:6-328
1i
Transferrin-2o7uI09
I:6-328
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Asym.Unit (468 KB)
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