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2NQQ
Biol. Unit 1
Info
Asym.Unit (507 KB)
Biol.Unit 1 (253 KB)
Biol.Unit 2 (252 KB)
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(1)
Title
:
MOEA R137Q
Authors
:
J. Nicolas, S. Xiang, H. Schindelin, K. V. Rajagopalan
Date
:
31 Oct 06 (Deposition) - 16 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Molybdopterin, Mpt, Moco, Molybdenum, Moea, Moga, Gephyrin, Cnx1, Cinnamon, Biosynthetic Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. D. Nichols, S. Xiang, H. Schindelin, K. V. Rajagopalan
Mutational Analysis Of Escherichia Coli Moea: Two Functiona Activities Map To The Active Site Cleft.
Biochemistry V. 46 78 2007
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
8
Ligand/Ion
GLYCEROL
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
7: AC8 (SOFTWARE)
8: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:266 , GLY A:269 , GLU A:270 , HOH A:1151
BINDING SITE FOR RESIDUE GOL A 901
2
AC3
SOFTWARE
HOH A:958 , PHE B:377 , SER B:378 , LEU B:379 , GLY B:380 , PHE B:408 , HOH B:936
BINDING SITE FOR RESIDUE GOL B 903
3
AC4
SOFTWARE
LEU A:189 , ASP A:203 , THR A:204 , ASN A:205 , GLY A:251 , GLY A:299 , HOH A:957
BINDING SITE FOR RESIDUE GOL A 904
4
AC5
SOFTWARE
LEU A:48 , ASP A:49 , GLY A:52 , ARG A:139
BINDING SITE FOR RESIDUE GOL A 905
5
AC6
SOFTWARE
ILE A:226 , ALA A:232 , ALA A:235 , ALA A:236 , GLU A:239 , HOH A:936 , HOH A:948 , HOH A:1002 , ILE D:226 , HOH D:999 , HOH D:1010
BINDING SITE FOR RESIDUE GOL A 906
6
AC7
SOFTWARE
ASP B:49 , SER B:144 , ALA B:145
BINDING SITE FOR RESIDUE GOL B 907
7
AC8
SOFTWARE
THR A:185 , GLU A:188 , GLY A:252 , ASP A:259 , HOH A:983 , HOH A:1052 , HOH A:1072 , HOH A:1106
BINDING SITE FOR RESIDUE GOL A 908
8
BC1
SOFTWARE
PRO B:23 , LEU B:24 , GLY B:321 , HOH B:947
BINDING SITE FOR RESIDUE GOL B 910
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: MOCF_BIOSYNTHESIS_2 (A:254-287,B:254-287)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MOCF_BIOSYNTHESIS_2
PS01079
Molybdenum cofactor biosynthesis proteins signature 2.
MOEA_ECOLI
254-287
2
A:254-287
B:254-287
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2nqqa1 (A:327-409)
1b: SCOP_d2nqqb1 (B:327-409)
1c: SCOP_d2nqqc1 (C:327-409)
1d: SCOP_d2nqqd1 (D:327-409)
2a: SCOP_d2nqqa2 (A:7-177)
2b: SCOP_d2nqqb2 (B:7-177)
2c: SCOP_d2nqqc2 (C:7-177)
2d: SCOP_d2nqqd2 (D:7-177)
3a: SCOP_d2nqqa3 (A:178-326)
3b: SCOP_d2nqqb3 (B:178-326)
3c: SCOP_d2nqqc3 (C:178-326)
3d: SCOP_d2nqqd3 (D:178-326)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
MoeA C-terminal domain-like
(20)
Family
:
MoeA C-terminal domain-like
(20)
Protein domain
:
Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain
(17)
Escherichia coli [TaxId: 562]
(14)
1a
d2nqqa1
A:327-409
1b
d2nqqb1
B:327-409
1c
d2nqqc1
C:327-409
1d
d2nqqd1
D:327-409
Fold
:
MoeA N-terminal region -like
(20)
Superfamily
:
MoeA N-terminal region -like
(20)
Family
:
MoeA N-terminal region -like
(20)
Protein domain
:
Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains
(17)
Escherichia coli [TaxId: 562]
(14)
2a
d2nqqa2
A:7-177
2b
d2nqqb2
B:7-177
2c
d2nqqc2
C:7-177
2d
d2nqqd2
D:7-177
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Molybdenum cofactor biosynthesis proteins
(49)
Superfamily
:
Molybdenum cofactor biosynthesis proteins
(49)
Family
:
MoeA central domain-like
(20)
Protein domain
:
MoeA, central domain
(17)
Escherichia coli [TaxId: 562]
(14)
3a
d2nqqa3
A:178-326
3b
d2nqqb3
B:178-326
3c
d2nqqc3
C:178-326
3d
d2nqqd3
D:178-326
[
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]
CATH Domains
(4, 16)
Info
all CATH domains
1a: CATH_2nqqA01 (A:7-26,A:176-328,A:403-409)
1b: CATH_2nqqB01 (B:7-26,B:176-328,B:403-409)
1c: CATH_2nqqC01 (C:7-26,C:176-328,C:403-409)
1d: CATH_2nqqD01 (D:7-26,D:176-328,D:403-409)
2a: CATH_2nqqA02 (A:27-50,A:143-175)
2b: CATH_2nqqB02 (B:27-50,B:143-175)
2c: CATH_2nqqC02 (C:27-50,C:143-175)
2d: CATH_2nqqD02 (D:27-50,D:143-175)
3a: CATH_2nqqA04 (A:329-402)
3b: CATH_2nqqB04 (B:329-402)
3c: CATH_2nqqC04 (C:329-402)
3d: CATH_2nqqD04 (D:329-402)
4a: CATH_2nqqA03 (A:51-142)
4b: CATH_2nqqB03 (B:51-142)
4c: CATH_2nqqC03 (C:51-142)
4d: CATH_2nqqD03 (D:51-142)
View:
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(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Molybdenum Cofactor Biosythetic Enzyme; Chain A
(34)
Homologous Superfamily
:
Molybdenum Cofactor Biosythetic Enzyme; Chain A
(34)
Escherichia coli. Organism_taxid: 562.
(9)
1a
2nqqA01
A:7-26,A:176-328,A:403-409
1b
2nqqB01
B:7-26,B:176-328,B:403-409
1c
2nqqC01
C:7-26,C:176-328,C:403-409
1d
2nqqD01
D:7-26,D:176-328,D:403-409
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Molybdopterin biosynthesis moea protein, domain 2
(16)
Homologous Superfamily
:
Molybdopterin biosynthesis moea protein, domain 2
(16)
Escherichia coli. Organism_taxid: 562.
(7)
2a
2nqqA02
A:27-50,A:143-175
2b
2nqqB02
B:27-50,B:143-175
2c
2nqqC02
C:27-50,C:143-175
2d
2nqqD02
D:27-50,D:143-175
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Beta-clip
(16)
Homologous Superfamily
:
MoeA C-terminal domain-like
(16)
Escherichia coli. Organism_taxid: 562.
(7)
3a
2nqqA04
A:329-402
3b
2nqqB04
B:329-402
3c
2nqqC04
C:329-402
3d
2nqqD04
D:329-402
Architecture
:
Beta Complex
(381)
Topology
:
Molybdopterin biosynthesis moeA protein; domain 3
(15)
Homologous Superfamily
:
Molybdopterin biosynthesis moea protein, domain 3.
(15)
Escherichia coli. Organism_taxid: 562.
(7)
4a
2nqqA03
A:51-142
4b
2nqqB03
B:51-142
4c
2nqqC03
C:51-142
4d
2nqqD03
D:51-142
[
close CATH info
]
Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_MoCF_biosynth_2nqqD01 (D:181-318)
1b: PFAM_MoCF_biosynth_2nqqD02 (D:181-318)
1c: PFAM_MoCF_biosynth_2nqqD03 (D:181-318)
1d: PFAM_MoCF_biosynth_2nqqD04 (D:181-318)
2a: PFAM_MoeA_C_2nqqD05 (D:332-404)
2b: PFAM_MoeA_C_2nqqD06 (D:332-404)
2c: PFAM_MoeA_C_2nqqD07 (D:332-404)
2d: PFAM_MoeA_C_2nqqD08 (D:332-404)
3a: PFAM_MoeA_N_2nqqD09 (D:7-168)
3b: PFAM_MoeA_N_2nqqD10 (D:7-168)
3c: PFAM_MoeA_N_2nqqD11 (D:7-168)
3d: PFAM_MoeA_N_2nqqD12 (D:7-168)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: MoCF_biosynth]
(31)
Family
:
MoCF_biosynth
(31)
Escherichia coli (strain K12)
(12)
1a
MoCF_biosynth-2nqqD01
D:181-318
1b
MoCF_biosynth-2nqqD02
D:181-318
1c
MoCF_biosynth-2nqqD03
D:181-318
1d
MoCF_biosynth-2nqqD04
D:181-318
Clan
:
no clan defined [family: MoeA_C]
(15)
Family
:
MoeA_C
(15)
Escherichia coli (strain K12)
(11)
2a
MoeA_C-2nqqD05
D:332-404
2b
MoeA_C-2nqqD06
D:332-404
2c
MoeA_C-2nqqD07
D:332-404
2d
MoeA_C-2nqqD08
D:332-404
Clan
:
no clan defined [family: MoeA_N]
(15)
Family
:
MoeA_N
(15)
Escherichia coli (strain K12)
(11)
3a
MoeA_N-2nqqD09
D:7-168
3b
MoeA_N-2nqqD10
D:7-168
3c
MoeA_N-2nqqD11
D:7-168
3d
MoeA_N-2nqqD12
D:7-168
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