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2NQQ
Asym. Unit
Info
Asym.Unit (507 KB)
Biol.Unit 1 (253 KB)
Biol.Unit 2 (252 KB)
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(1)
Title
:
MOEA R137Q
Authors
:
J. Nicolas, S. Xiang, H. Schindelin, K. V. Rajagopalan
Date
:
31 Oct 06 (Deposition) - 16 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Molybdopterin, Mpt, Moco, Molybdenum, Moea, Moga, Gephyrin, Cnx1, Cinnamon, Biosynthetic Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. D. Nichols, S. Xiang, H. Schindelin, K. V. Rajagopalan
Mutational Analysis Of Escherichia Coli Moea: Two Functiona Activities Map To The Active Site Cleft.
Biochemistry V. 46 78 2007
[
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
1j: GLYCEROL (GOLj)
1k: GLYCEROL (GOLk)
1l: GLYCEROL (GOLl)
1m: GLYCEROL (GOLm)
1n: GLYCEROL (GOLn)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
14
Ligand/Ion
GLYCEROL
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:266 , GLY A:269 , GLU A:270 , HOH A:1151
BINDING SITE FOR RESIDUE GOL A 901
02
AC2
SOFTWARE
PHE D:377 , SER D:378 , LEU D:379 , GLY D:380 , PHE D:408 , HOH D:1029
BINDING SITE FOR RESIDUE GOL D 902
03
AC3
SOFTWARE
HOH A:958 , PHE B:377 , SER B:378 , LEU B:379 , GLY B:380 , PHE B:408 , HOH B:936
BINDING SITE FOR RESIDUE GOL B 903
04
AC4
SOFTWARE
LEU A:189 , ASP A:203 , THR A:204 , ASN A:205 , GLY A:251 , GLY A:299 , HOH A:957
BINDING SITE FOR RESIDUE GOL A 904
05
AC5
SOFTWARE
LEU A:48 , ASP A:49 , GLY A:52 , ARG A:139
BINDING SITE FOR RESIDUE GOL A 905
06
AC6
SOFTWARE
ILE A:226 , ALA A:232 , ALA A:235 , ALA A:236 , GLU A:239 , HOH A:936 , HOH A:948 , HOH A:1002 , ILE D:226 , HOH D:999 , HOH D:1010
BINDING SITE FOR RESIDUE GOL A 906
07
AC7
SOFTWARE
ASP B:49 , SER B:144 , ALA B:145
BINDING SITE FOR RESIDUE GOL B 907
08
AC8
SOFTWARE
THR A:185 , GLU A:188 , GLY A:252 , ASP A:259 , HOH A:983 , HOH A:1052 , HOH A:1072 , HOH A:1106
BINDING SITE FOR RESIDUE GOL A 908
09
AC9
SOFTWARE
ARG C:155 , ALA D:406 , GLY D:409 , HOH D:1013
BINDING SITE FOR RESIDUE GOL D 909
10
BC1
SOFTWARE
PRO B:23 , LEU B:24 , GLY B:321 , HOH B:947
BINDING SITE FOR RESIDUE GOL B 910
11
BC2
SOFTWARE
PRO C:47 , LEU C:167 , GLY C:168 , GLY D:193 , GLN D:194 , TYR D:202
BINDING SITE FOR RESIDUE GOL C 911
12
BC3
SOFTWARE
ILE D:201 , ASP D:203 , THR D:204 , ASN D:205 , GLY D:251 , GLY D:299
BINDING SITE FOR RESIDUE GOL D 912
13
BC4
SOFTWARE
ARG D:338 , LYS D:340 , GLN D:349 , THR D:365 , GLY D:367 , HOH D:929 , HOH D:1056
BINDING SITE FOR RESIDUE GOL D 913
14
BC5
SOFTWARE
HOH D:1035
BINDING SITE FOR RESIDUE GOL D 914
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: MOCF_BIOSYNTHESIS_2 (A:254-287,B:254-287,C:254-287,D:25...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MOCF_BIOSYNTHESIS_2
PS01079
Molybdenum cofactor biosynthesis proteins signature 2.
MOEA_ECOLI
254-287
4
A:254-287
B:254-287
C:254-287
D:254-287
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Exons
(0, 0)
Info
All Exons
View:
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2nqqa1 (A:327-409)
1b: SCOP_d2nqqb1 (B:327-409)
1c: SCOP_d2nqqc1 (C:327-409)
1d: SCOP_d2nqqd1 (D:327-409)
2a: SCOP_d2nqqa2 (A:7-177)
2b: SCOP_d2nqqb2 (B:7-177)
2c: SCOP_d2nqqc2 (C:7-177)
2d: SCOP_d2nqqd2 (D:7-177)
3a: SCOP_d2nqqa3 (A:178-326)
3b: SCOP_d2nqqb3 (B:178-326)
3c: SCOP_d2nqqc3 (C:178-326)
3d: SCOP_d2nqqd3 (D:178-326)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
beta-clip
(280)
Superfamily
:
MoeA C-terminal domain-like
(20)
Family
:
MoeA C-terminal domain-like
(20)
Protein domain
:
Molybdenum cofactor biosynthesis protein MoeA, C-terminal domain
(17)
Escherichia coli [TaxId: 562]
(14)
1a
d2nqqa1
A:327-409
1b
d2nqqb1
B:327-409
1c
d2nqqc1
C:327-409
1d
d2nqqd1
D:327-409
Fold
:
MoeA N-terminal region -like
(20)
Superfamily
:
MoeA N-terminal region -like
(20)
Family
:
MoeA N-terminal region -like
(20)
Protein domain
:
Molybdenum cofactor biosynthesis protein MoeA, N-terminal and linker domains
(17)
Escherichia coli [TaxId: 562]
(14)
2a
d2nqqa2
A:7-177
2b
d2nqqb2
B:7-177
2c
d2nqqc2
C:7-177
2d
d2nqqd2
D:7-177
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Molybdenum cofactor biosynthesis proteins
(49)
Superfamily
:
Molybdenum cofactor biosynthesis proteins
(49)
Family
:
MoeA central domain-like
(20)
Protein domain
:
MoeA, central domain
(17)
Escherichia coli [TaxId: 562]
(14)
3a
d2nqqa3
A:178-326
3b
d2nqqb3
B:178-326
3c
d2nqqc3
C:178-326
3d
d2nqqd3
D:178-326
[
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]
CATH Domains
(4, 16)
Info
all CATH domains
1a: CATH_2nqqA01 (A:7-26,A:176-328,A:403-409)
1b: CATH_2nqqB01 (B:7-26,B:176-328,B:403-409)
1c: CATH_2nqqC01 (C:7-26,C:176-328,C:403-409)
1d: CATH_2nqqD01 (D:7-26,D:176-328,D:403-409)
2a: CATH_2nqqA02 (A:27-50,A:143-175)
2b: CATH_2nqqB02 (B:27-50,B:143-175)
2c: CATH_2nqqC02 (C:27-50,C:143-175)
2d: CATH_2nqqD02 (D:27-50,D:143-175)
3a: CATH_2nqqA04 (A:329-402)
3b: CATH_2nqqB04 (B:329-402)
3c: CATH_2nqqC04 (C:329-402)
3d: CATH_2nqqD04 (D:329-402)
4a: CATH_2nqqA03 (A:51-142)
4b: CATH_2nqqB03 (B:51-142)
4c: CATH_2nqqC03 (C:51-142)
4d: CATH_2nqqD03 (D:51-142)
View:
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Molybdenum Cofactor Biosythetic Enzyme; Chain A
(34)
Homologous Superfamily
:
Molybdenum Cofactor Biosythetic Enzyme; Chain A
(34)
Escherichia coli. Organism_taxid: 562.
(9)
1a
2nqqA01
A:7-26,A:176-328,A:403-409
1b
2nqqB01
B:7-26,B:176-328,B:403-409
1c
2nqqC01
C:7-26,C:176-328,C:403-409
1d
2nqqD01
D:7-26,D:176-328,D:403-409
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Molybdopterin biosynthesis moea protein, domain 2
(16)
Homologous Superfamily
:
Molybdopterin biosynthesis moea protein, domain 2
(16)
Escherichia coli. Organism_taxid: 562.
(7)
2a
2nqqA02
A:27-50,A:143-175
2b
2nqqB02
B:27-50,B:143-175
2c
2nqqC02
C:27-50,C:143-175
2d
2nqqD02
D:27-50,D:143-175
Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Beta-clip
(16)
Homologous Superfamily
:
MoeA C-terminal domain-like
(16)
Escherichia coli. Organism_taxid: 562.
(7)
3a
2nqqA04
A:329-402
3b
2nqqB04
B:329-402
3c
2nqqC04
C:329-402
3d
2nqqD04
D:329-402
Architecture
:
Beta Complex
(381)
Topology
:
Molybdopterin biosynthesis moeA protein; domain 3
(15)
Homologous Superfamily
:
Molybdopterin biosynthesis moea protein, domain 3.
(15)
Escherichia coli. Organism_taxid: 562.
(7)
4a
2nqqA03
A:51-142
4b
2nqqB03
B:51-142
4c
2nqqC03
C:51-142
4d
2nqqD03
D:51-142
[
close CATH info
]
Pfam Domains
(3, 12)
Info
all PFAM domains
1a: PFAM_MoCF_biosynth_2nqqD01 (D:181-318)
1b: PFAM_MoCF_biosynth_2nqqD02 (D:181-318)
1c: PFAM_MoCF_biosynth_2nqqD03 (D:181-318)
1d: PFAM_MoCF_biosynth_2nqqD04 (D:181-318)
2a: PFAM_MoeA_C_2nqqD05 (D:332-404)
2b: PFAM_MoeA_C_2nqqD06 (D:332-404)
2c: PFAM_MoeA_C_2nqqD07 (D:332-404)
2d: PFAM_MoeA_C_2nqqD08 (D:332-404)
3a: PFAM_MoeA_N_2nqqD09 (D:7-168)
3b: PFAM_MoeA_N_2nqqD10 (D:7-168)
3c: PFAM_MoeA_N_2nqqD11 (D:7-168)
3d: PFAM_MoeA_N_2nqqD12 (D:7-168)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: MoCF_biosynth]
(31)
Family
:
MoCF_biosynth
(31)
Escherichia coli (strain K12)
(12)
1a
MoCF_biosynth-2nqqD01
D:181-318
1b
MoCF_biosynth-2nqqD02
D:181-318
1c
MoCF_biosynth-2nqqD03
D:181-318
1d
MoCF_biosynth-2nqqD04
D:181-318
Clan
:
no clan defined [family: MoeA_C]
(15)
Family
:
MoeA_C
(15)
Escherichia coli (strain K12)
(11)
2a
MoeA_C-2nqqD05
D:332-404
2b
MoeA_C-2nqqD06
D:332-404
2c
MoeA_C-2nqqD07
D:332-404
2d
MoeA_C-2nqqD08
D:332-404
Clan
:
no clan defined [family: MoeA_N]
(15)
Family
:
MoeA_N
(15)
Escherichia coli (strain K12)
(11)
3a
MoeA_N-2nqqD09
D:7-168
3b
MoeA_N-2nqqD10
D:7-168
3c
MoeA_N-2nqqD11
D:7-168
3d
MoeA_N-2nqqD12
D:7-168
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Asym.Unit (507 KB)
Header - Asym.Unit
Biol.Unit 1 (253 KB)
Header - Biol.Unit 1
Biol.Unit 2 (252 KB)
Header - Biol.Unit 2
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