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2NQL
Asym. Unit
Info
Asym.Unit (151 KB)
Biol.Unit 1 (145 KB)
Biol.Unit 2 (286 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A MEMBER OF THE ENOLASE SUPERFAMILY FROM AGROBACTERIUM TUMEFACIENS
Authors
:
Y. Patskovsky, U. Ramagopal, R. Toro, J. M. Sauder, M. Dickey, J. M. Adam S. Ozyurt, S. R. Wasserman, J. Gerlt, S. K. Burley, S. C. Almo, New York Research Center For Structural Genomics (Nysgxrc)
Date
:
31 Oct 06 (Deposition) - 14 Nov 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (2x)
Keywords
:
Enolase, Structural Genomics, Protein Structure Initiative, Psi, Nysgxrc, New York Sgx Research Center For Structural Genomics Structural Genomics, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, U. Ramagopal, R. Toro, J. M. Sauder, M. Dickey, J. M. Adams, S. Ozyurt, S. R. Wasserman, J. Gerlt, S. K. Burley, S. C. Alm
Crystal Structure Of Enolase From Agrobacterium Tumefaciens C58
To Be Published
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Hetero Components
(4, 21)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
4a: UNKNOWN LIGAND (UNLa)
4b: UNKNOWN LIGAND (UNLb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
6
Ligand/Ion
GLYCEROL
2
NA
2
Ligand/Ion
SODIUM ION
3
SO4
11
Ligand/Ion
SULFATE ION
4
UNL
2
Ligand/Ion
UNKNOWN LIGAND
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:112 , TYR B:70 , HIS B:315 , THR B:317 , HOH B:1228 , HOH B:1281 , HOH B:1330 , HOH B:1364 , HOH B:1386 , HOH B:1392
BINDING SITE FOR RESIDUE SO4 B 1001
02
AC2
SOFTWARE
PRO A:154 , ARG A:364 , HOH A:1501
BINDING SITE FOR RESIDUE SO4 A 1002
03
AC3
SOFTWARE
VAL A:111 , ASN B:42 , THR B:44 , TYR B:46 , HIS B:216 , HOH B:1230 , HOH B:1453
BINDING SITE FOR RESIDUE SO4 B 1003
04
AC4
SOFTWARE
ARG B:163 , THR B:164 , LEU B:165 , ARG B:168 , ALA B:190 , ASP B:191 , HOH B:1432
BINDING SITE FOR RESIDUE SO4 B 1004
05
AC5
SOFTWARE
ARG A:178 , ASP B:151 , SER B:152 , ARG B:352 , HIS B:366 , HOH B:1456 , HOH B:1596 , HOH B:1640
BINDING SITE FOR RESIDUE SO4 B 1006
06
AC6
SOFTWARE
TYR A:46 , HIS A:216 , GOL A:1107 , HOH A:1499 , HOH A:1567
BINDING SITE FOR RESIDUE SO4 A 1007
07
AC7
SOFTWARE
GLU A:386 , ARG A:387 , HOH A:1507 , HOH A:1571
BINDING SITE FOR RESIDUE SO4 A 1008
08
AC8
SOFTWARE
PRO A:33 , ASN A:34 , GLY A:35 , ARG B:26 , GLU B:27 , HOH B:1388
BINDING SITE FOR RESIDUE SO4 B 1009
09
AC9
SOFTWARE
LYS B:256 , ARG B:282
BINDING SITE FOR RESIDUE SO4 B 1010
10
BC1
SOFTWARE
GLY B:302 , ALA B:306 , THR B:333 , LEU B:334 , SER B:335 , HOH B:1224 , HOH B:1241 , HOH B:1549
BINDING SITE FOR RESIDUE SO4 B 1011
11
BC2
SOFTWARE
ASP A:151 , SER A:152 , HOH A:1221 , HOH A:1292 , HOH A:1363 , HOH A:1516 , HOH A:1585 , LYS B:338
BINDING SITE FOR RESIDUE SO4 A 1012
12
BC3
SOFTWARE
GLU A:240 , GLU A:266 , HIS A:315 , HOH A:1224 , HOH A:1360
BINDING SITE FOR RESIDUE NA A 401
13
BC4
SOFTWARE
LYS B:184 , GLU B:240 , GLU B:266 , GLN B:287 , HIS B:315 , GLU B:341
BINDING SITE FOR RESIDUE NA B 402
14
BC5
SOFTWARE
TYR A:174 , HOH A:1394 , PRO B:16 , ARG B:352 , LEU B:353 , HOH B:1358 , HOH B:1677
BINDING SITE FOR RESIDUE UNL B 1201
15
BC6
SOFTWARE
PRO A:154 , ALA A:155 , TYR A:156 , ASN A:181 , ALA A:182 , LYS A:210 , TRP A:237 , LYS A:338 , GLY A:339 , HOH A:1299 , HOH A:1306
BINDING SITE FOR RESIDUE UNL A 1202
16
BC7
SOFTWARE
ARG A:300 , HOH A:1390 , HOH A:1417 , HOH A:1599
BINDING SITE FOR RESIDUE GOL A 1101
17
BC8
SOFTWARE
ARG B:300 , HOH B:1462 , HOH B:1593
BINDING SITE FOR RESIDUE GOL B 1102
18
BC9
SOFTWARE
GLY A:302 , THR A:333 , LEU A:334 , SER A:335 , HOH A:1288 , HOH A:1308 , HOH A:1458
BINDING SITE FOR RESIDUE GOL A 1103
19
CC1
SOFTWARE
ARG A:51 , HOH A:1274 , HOH A:1415 , ARG B:163
BINDING SITE FOR RESIDUE GOL B 1105
20
CC2
SOFTWARE
ASP B:355 , GLY B:356 , GLY B:374 , VAL B:375 , ARG B:376 , HOH B:1601
BINDING SITE FOR RESIDUE GOL B 1106
21
CC3
SOFTWARE
TYR A:70 , ILE A:72 , GLU A:266 , HIS A:315 , THR A:317 , SO4 A:1007 , HOH A:1212 , HOH A:1217 , HOH A:1473 , HOH A:1489 , HOH A:1567 , ARG B:112
BINDING SITE FOR RESIDUE GOL A 1107
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2nqlA01 (A:1-148,A:369-388)
1b: CATH_2nqlB01 (B:1-148,B:369-388)
2a: CATH_2nqlA02 (A:149-368)
2b: CATH_2nqlB02 (B:149-368)
View:
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Classes
(
)
(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
Enolase-like, N-terminal domain
(130)
C58 (Agrobacterium tumefaciens str)
(2)
1a
2nqlA01
A:1-148,A:369-388
1b
2nqlB01
B:1-148,B:369-388
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Enolase superfamily
(142)
C58 (Agrobacterium tumefaciens str)
(2)
2a
2nqlA02
A:149-368
2b
2nqlB02
B:149-368
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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)
Protein
Nucleic
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Asymmetric Unit 1
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select chains 'A' and 'C'
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (151 KB)
Header - Asym.Unit
Biol.Unit 1 (145 KB)
Header - Biol.Unit 1
Biol.Unit 2 (286 KB)
Header - Biol.Unit 2
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