PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2LOB
Asym. Unit
Info
Asym.Unit (174 KB)
Biol.Unit 1 (26 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
Models
(7 )
Title
:
PDZ DOMAIN OF CAL (CYSTIC FIBROSIS TRANSMEMBRANE REGULATOR-ASSOCIATED LIGAND)
Authors
:
A. Piserchio, A. Fellows, D. R. Madden, D. F. Mierke
Date
:
20 Jan 12 (Deposition) - 13 Jun 12 (Release) - 13 Jun 12 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (7 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Protein-Hydrolase Complex, Peptide Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Piserchio, A. Fellows, D. R. Madden, D. F. Mierke
Association Of The Cystic Fibrosis Transmembrane Regulator With Cal: Structural Features And Molecular Dynamics.
Biochemistry V. 44 16158 2005
[
close entry info
]
Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
close Hetero component info
]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:30-112)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
GOPC_HUMAN
288-371
1
A:30-112
[
close PROSITE info
]
Exons
(4, 4)
Info
All Exons
Exon 1.30b (B:113-120)
Exon 2.6 (A:27-46 (gaps))
Exon 2.7 (A:47-101)
Exon 2.8 (A:102-112)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.29/1.30b
2: Boundary 1.30b/-
3: Boundary 2.5a/2.6
4: Boundary 2.6/2.7
5: Boundary 2.7/2.8
6: Boundary 2.8/2.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3a
ENST00000003084
3a
ENSE00001343851
chr7:
117120017-117120201
185
CFTR_HUMAN
1-18
18
0
-
-
1.4
ENST00000003084
4
ENSE00001708957
chr7:
117144307-117144417
111
CFTR_HUMAN
18-55
38
0
-
-
1.5
ENST00000003084
5
ENSE00001778965
chr7:
117149088-117149196
109
CFTR_HUMAN
55-91
37
0
-
-
1.6b
ENST00000003084
6b
ENSE00000718611
chr7:
117170953-117171168
216
CFTR_HUMAN
92-163
72
0
-
-
1.7
ENST00000003084
7
ENSE00000718620
chr7:
117174330-117174419
90
CFTR_HUMAN
164-193
30
0
-
-
1.8
ENST00000003084
8
ENSE00000718626
chr7:
117175302-117175465
164
CFTR_HUMAN
194-248
55
0
-
-
1.9
ENST00000003084
9
ENSE00000718630
chr7:
117176602-117176727
126
CFTR_HUMAN
248-290
43
0
-
-
1.10
ENST00000003084
10
ENSE00000718634
chr7:
117180154-117180400
247
CFTR_HUMAN
290-372
83
0
-
-
1.11
ENST00000003084
11
ENSE00000718637
chr7:
117182070-117182162
93
CFTR_HUMAN
373-403
31
0
-
-
1.12
ENST00000003084
12
ENSE00001738590
chr7:
117188695-117188877
183
CFTR_HUMAN
404-464
61
0
-
-
1.13a
ENST00000003084
13a
ENSE00000718648
chr7:
117199518-117199709
192
CFTR_HUMAN
465-528
64
0
-
-
1.15b
ENST00000003084
15b
ENSE00000718654
chr7:
117227793-117227887
95
CFTR_HUMAN
529-560
32
0
-
-
1.16
ENST00000003084
16
ENSE00000718660
chr7:
117230407-117230493
87
CFTR_HUMAN
560-589
30
0
-
-
1.17
ENST00000003084
17
ENSE00000718666
chr7:
117231988-117232711
724
CFTR_HUMAN
589-830
242
0
-
-
1.18
ENST00000003084
18
ENSE00000718674
chr7:
117234984-117235112
129
CFTR_HUMAN
831-873
43
0
-
-
1.19
ENST00000003084
19
ENSE00001015963
chr7:
117242880-117242917
38
CFTR_HUMAN
874-886
13
0
-
-
1.20
ENST00000003084
20
ENSE00000977441
chr7:
117243586-117243836
251
CFTR_HUMAN
886-970
85
0
-
-
1.21
ENST00000003084
21
ENSE00000977442
chr7:
117246728-117246807
80
CFTR_HUMAN
970-996
27
0
-
-
1.22
ENST00000003084
22
ENSE00000718690
chr7:
117250573-117250723
151
CFTR_HUMAN
997-1047
51
0
-
-
1.23a
ENST00000003084
23a
ENSE00000977443
chr7:
117251635-117251862
228
CFTR_HUMAN
1047-1123
77
0
-
-
1.24
ENST00000003084
24
ENSE00000718699
chr7:
117254667-117254767
101
CFTR_HUMAN
1123-1156
34
0
-
-
1.25a
ENST00000003084
25a
ENSE00000718704
chr7:
117267576-117267824
249
CFTR_HUMAN
1157-1239
83
0
-
-
1.26
ENST00000003084
26
ENSE00000718708
chr7:
117282492-117282647
156
CFTR_HUMAN
1240-1291
52
0
-
-
1.27
ENST00000003084
27
ENSE00000718713
chr7:
117292896-117292985
90
CFTR_HUMAN
1292-1321
30
0
-
-
1.28
ENST00000003084
28
ENSE00000718718
chr7:
117304742-117304914
173
CFTR_HUMAN
1322-1379
58
0
-
-
1.29
ENST00000003084
29
ENSE00000718724
chr7:
117305513-117305618
106
CFTR_HUMAN
1379-1414
36
0
-
-
1.30b
ENST00000003084
30b
ENSE00001918100
chr7:
117306962-117308715
1754
CFTR_HUMAN
1415-1480
66
1
B:113-120
8
2.1b
ENST00000368498
1b
ENSE00001931189
chr6:
117923527-117923167
361
GOPC_HUMAN
1-95
95
0
-
-
2.2
ENST00000368498
2
ENSE00000840039
chr6:
117900227-117900063
165
GOPC_HUMAN
96-150
55
0
-
-
2.3
ENST00000368498
3
ENSE00001371009
chr6:
117898634-117898611
24
GOPC_HUMAN
151-158
8
0
-
-
2.4
ENST00000368498
4
ENSE00000762781
chr6:
117896515-117896340
176
GOPC_HUMAN
159-217
59
0
-
-
2.5a
ENST00000368498
5a
ENSE00000762780
chr6:
117894795-117894630
166
GOPC_HUMAN
217-272
56
0
-
-
2.6
ENST00000368498
6
ENSE00002164938
chr6:
117892118-117892023
96
GOPC_HUMAN
273-304
32
1
A:27-46 (gaps)
21
2.7
ENST00000368498
7
ENSE00002151421
chr6:
117890899-117890735
165
GOPC_HUMAN
305-359
55
1
A:47-101
55
2.8
ENST00000368498
8
ENSE00002152146
chr6:
117888197-117888017
181
GOPC_HUMAN
360-420
61
1
A:102-112
11
2.9
ENST00000368498
9
ENSE00001017893
chr6:
117884547-117881432
3116
GOPC_HUMAN
420-462
43
0
-
-
[
close EXON info
]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (174 KB)
Header - Asym.Unit
Biol.Unit 1 (26 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2LOB
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help