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Asym. Unit
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Asym.Unit (591 KB)
Biol.Unit 1 (31 KB)
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Models
(20 )
Title
:
SOLUTION NMR STRUCTURE OF HUMAN POLYMERASE IOTA UBM2 IN COMPLEX WITH UBIQUITIN
Authors
:
G. Cui, R. Benirschke, G. Mer
Date
:
01 Feb 10 (Deposition) - 03 Nov 10 (Release) - 08 Dec 10 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Biol. Unit 1: A,B (1x)
Keywords
:
Translesion Synthesis Dna Polymerase, Y-Family Dna Polymerase, Ubiquitin Binding Motif, Ubiquitin, Isopeptide Bond, Nucleus, Phosphoprotein, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
G. Cui, R. C. Benirschke, H. F. Tuan, N. Juranic, S. Macura, M. V. Botuyan, G. Mer
Structural Basis Of Ubiquitin Recognition By Translesion Synthesis Dna Polymerase Iota.
Biochemistry V. 49 10198 2010
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Hetero Components
(0, 0)
Info
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_021245 (T706T, chain B, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_021245
A
731
T
POLI_HUMAN
Polymorphism
8305
B
T
706
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: UBIQUITIN_2 (A:1-76,A:1-76,-|-|A:1-76,-|-|-|-|-...)
2: UBIQUITIN_1 (A:27-52,A:27-52,-|-|A:27-52,-|-|-|...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
UBIQUITIN_2
PS50053
Ubiquitin domain profile.
RS27A_HUMAN
1-76
1
A:1-76
RL40_HUMAN
1-76
1
A:1-76
UBB_HUMAN
1-76
77-152
153-228
1
-
-
A:1-76
UBC_HUMAN
1-76
77-152
153-228
229-304
305-380
381-456
457-532
533-608
609-684
1
-
-
-
-
-
-
-
-
A:1-76
2
UBIQUITIN_1
PS00299
Ubiquitin domain signature.
RS27A_HUMAN
27-52
1
A:27-52
RL40_HUMAN
27-52
1
A:27-52
UBB_HUMAN
27-52
103-128
179-204
1
-
-
A:27-52
UBC_HUMAN
27-52
103-128
179-204
255-280
331-356
407-432
483-508
559-584
635-660
1
-
-
-
-
-
-
-
-
A:27-52
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Exons
(1, 1)
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All Exons
Exon 1.2 (A:1-76)
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/-
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000339647
1
ENSE00001257182
chr12:
125399577-125399133
445
UBC_HUMAN
-
0
0
-
-
1.2
ENST00000339647
2
ENSE00001406973
chr12:
125398320-125396194
2127
UBC_HUMAN
1-686
686
1
A:1-76
76
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ktfa_ (A:)
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)
Protein Domains
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Organisms
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)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
Ubiquitin-related
(337)
Protein domain
:
Ubiquitin
(162)
Human (Homo sapiens) [TaxId: 9606]
(121)
1a
d2ktfa_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_ubiquitin_2ktfA01 (A:6-74)
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Clans
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Organisms
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)
(
)
Clan
:
Ubiquitin
(279)
Family
:
ubiquitin
(99)
Homo sapiens (Human)
(67)
1a
ubiquitin-2ktfA01
A:6-74
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Asymmetric Unit 1
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Asym.Unit (591 KB)
Header - Asym.Unit
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