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2K1B
Asym. Unit
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Asym.Unit (320 KB)
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Models
(20 )
Title
:
SOLUTION NMR STRUCTURE OF THE CHROMO DOMAIN OF THE CHROMOBOX PROTEIN HOMOLOG 7
Authors
:
L. Kaustov, A. Lemak, H. Quyang, A. Gutmanas, C. Fares, C. Bountra, J. Weigelt, P. Loppnau, M. Ravichandran, A. M. Edwards, J. Min, C. H. Arrowsmith, Structural Genomics Consortium (Sgc)
Date
:
25 Feb 08 (Deposition) - 11 Mar 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Alpha/Beta Protein, Chromatin Regulator, Nucleus, Repressor, Transcription, Transcription Regulation, Structural Genomics Consortium, Sgc, Transcription Regulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Kaustov, A. Lemak, H. Quyang, A. Gutmanas, C. Fares, C. Bountra, J. Weigelt, P. Loppnau, M. Ravichandran, A. M. Edwards, J. Min, C. H. Arrowsmith
Solution Nmr Structure Of The Chromobox Protein Homolog 7.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 2)
Info
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1: CHROMO_2 (A:4-55)
2: CHROMO_1 (A:21-41)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CHROMO_2
PS50013
Chromo and chromo shadow domain profile.
CBX7_HUMAN
11-69
1
A:4-55
2
CHROMO_1
PS00598
Chromo domain signature.
CBX7_HUMAN
28-48
1
A:21-41
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Exons
(4, 4)
Info
All Exons
Exon 1.1b (A:1-16)
Exon 1.2a (A:17-31)
Exon 1.3a (A:31-53)
Exon 1.4 (A:53-55)
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1: Boundary -/1.1b
2: Boundary 1.1b/1.2a
3: Boundary 1.2a/1.3a
4: Boundary 1.3a/1.4
5: Boundary 1.4/1.5c
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000216133
1b
ENSE00001934950
chr22:
39548655-39548381
275
CBX7_HUMAN
1-23
23
1
A:1-16
16
1.2a
ENST00000216133
2a
ENSE00000654689
chr22:
39545837-39545794
44
CBX7_HUMAN
24-38
15
1
A:17-31
15
1.3a
ENST00000216133
3a
ENSE00001330607
chr22:
39537441-39537376
66
CBX7_HUMAN
38-60
23
1
A:31-53
23
1.4
ENST00000216133
4
ENSE00001308314
chr22:
39534707-39534641
67
CBX7_HUMAN
60-82
23
1
A:53-55
3
1.5c
ENST00000216133
5c
ENSE00000654684
chr22:
39530757-39530406
352
CBX7_HUMAN
83-200
118
0
-
-
1.6b
ENST00000216133
6b
ENSE00001299764
chr22:
39530053-39526777
3277
CBX7_HUMAN
200-251
52
0
-
-
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SCOP Domains
(1, 1)
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1a: SCOP_d2k1ba_ (A:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
Chromo domain-like
(82)
Family
:
automated matches
(10)
Protein domain
:
automated matches
(10)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d2k1ba_
A:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2k1bA00 (A:1-55)
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Organisms
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)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(1040)
Homologous Superfamily
:
[code=2.40.50.40, no name defined]
(161)
Human (Homo sapiens)
(86)
1a
2k1bA00
A:1-55
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Pfam Domains
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Chain A
Asymmetric Unit 1
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