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Asym. Unit
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Asym.Unit (563 KB)
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Models
(20 )
Title
:
SOLUTION NMR STRUCTURE OF CAPER RRM2 DOMAIN. NORTHEAST STRUCTURAL GENOMICS TARGET HR4730A
Authors
:
P. Rossi, L. Zhao, C. Nwosu, K. Cunningham, L. Owens, R. Xiao, J. Liu, M. C. Baran, G. Swapna, T. B. Acton, B. Rost, G. T. Montelione, Northeast Structural Genomics Consortium (Nesg)
Date
:
28 Jun 07 (Deposition) - 04 Sep 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Rna Binding Motif Of Rbm39_human (Caper), Rrm2 Domain, Solution Nmr Structure, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Rna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Rossi, R. Xiao, T. B. Acton, G. T. Montelione
Solution Nmr Structure Of Caper Rrm2 Domain.
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RRM (A:27-105|-)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RRM
PS50102
Eukaryotic RNA Recognition Motif (RRM) profile.
RBM39_HUMAN
250-328
153-230
1
A:27-105
-
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Exons
(4, 4)
Info
All Exons
Exon 1.11c (A:1-6 (gaps))
Exon 1.12b (A:7-52)
Exon 1.13a (A:53-74)
Exon 1.14a (A:75-108)
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All Exon Boundaries
1: Boundary 1.10c/1.11c
2: Boundary 1.11c/1.12b
3: Boundary 1.12b/1.13a
4: Boundary 1.13a/1.14a
5: Boundary 1.14a/1.16e
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1q
ENST00000253363
1q
ENSE00001938005
chr20:
34329873-34329863
11
RBM39_HUMAN
-
0
0
-
-
1.3a
ENST00000253363
3a
ENSE00002165663
chr20:
34328809-34328746
64
RBM39_HUMAN
1-17
17
0
-
-
1.3m
ENST00000253363
3m
ENSE00001659166
chr20:
34326939-34326890
50
RBM39_HUMAN
18-34
17
0
-
-
1.7e
ENST00000253363
7e
ENSE00002169946
chr20:
34320057-34319863
195
RBM39_HUMAN
34-99
66
0
-
-
1.8c
ENST00000253363
8c
ENSE00001633700
chr20:
34317449-34317384
66
RBM39_HUMAN
99-121
23
0
-
-
1.9a
ENST00000253363
9a
ENSE00001644239
chr20:
34317287-34317234
54
RBM39_HUMAN
121-139
19
0
-
-
1.10c
ENST00000253363
10c
ENSE00001789378
chr20:
34313077-34312960
118
RBM39_HUMAN
139-178
40
0
-
-
1.11c
ENST00000253363
11c
ENSE00002082263
chr20:
34312644-34312492
153
RBM39_HUMAN
179-229
51
1
A:1-6 (gaps)
11
1.12b
ENST00000253363
12b
ENSE00001773401
chr20:
34309799-34309662
138
RBM39_HUMAN
230-275
46
1
A:7-52
46
1.13a
ENST00000253363
13a
ENSE00001613700
chr20:
34304727-34304662
66
RBM39_HUMAN
276-297
22
1
A:53-74
22
1.14a
ENST00000253363
14a
ENSE00001623326
chr20:
34302311-34302107
205
RBM39_HUMAN
298-366
69
1
A:75-108
34
1.16e
ENST00000253363
16e
ENSE00001600583
chr20:
34301018-34300941
78
RBM39_HUMAN
366-392
27
0
-
-
1.18b
ENST00000253363
18b
ENSE00001753743
chr20:
34297196-34297146
51
RBM39_HUMAN
392-409
18
0
-
-
1.19d
ENST00000253363
19d
ENSE00001693917
chr20:
34295123-34295042
82
RBM39_HUMAN
409-436
28
0
-
-
1.20c
ENST00000253363
20c
ENSE00001670308
chr20:
34293252-34293147
106
RBM39_HUMAN
436-471
36
0
-
-
1.20f
ENST00000253363
20f
ENSE00001598280
chr20:
34292668-34292590
79
RBM39_HUMAN
472-498
27
0
-
-
1.21h
ENST00000253363
21h
ENSE00001887140
chr20:
34292503-34291532
972
RBM39_HUMAN
498-530
33
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2jrsA01 (A:25-103)
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Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Alpha-Beta Plaits
(1688)
Homologous Superfamily
:
[code=3.30.70.330, no name defined]
(307)
Human (Homo sapiens)
(81)
1a
2jrsA01
A:25-103
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_RRM_1_2jrsA01 (A:29-99)
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Clan
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RRM
(206)
Family
:
RRM_1
(131)
Homo sapiens (Human)
(94)
1a
RRM_1-2jrsA01
A:29-99
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Chain A
Asymmetric Unit 1
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