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Asym.Unit (1.4 MB)
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Models
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Title
:
SOLUTION STRUCTURE OF THE N-TERMINAL EXTRACELLULAR DOMAIN OF THE LYMPHOCYTE RECEPTOR CD5 (CD5 DOMAIN 1)
Authors
:
A. Garza-Garcia, R. Harris, D. Esposito, P. C. Driscoll
Date
:
19 Mar 07 (Deposition) - 26 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (50 x)
Keywords
:
Cd5, Domain 1, Scavenger Receptor Cysteine Rich, Srcr, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Garza-Garcia, D. Esposito, W. Rieping, R. Harris, C. Briggs, M. H. Brown, P. C. Driscoll
Three-Dimensional Solution Structure And Conformational Plasticity Of The N-Terminal Scavenger Receptor Cysteine-Rich Domain Of Human Cd5
J. Mol. Biol. V. 378 129 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
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1: SRCR_2 (A:35-133|-|-)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SRCR_2
PS50287
SRCR domain profile.
CD5_HUMAN
35-133
276-368
159-268
1
A:35-133
-
-
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Exons
(3, 3)
Info
All Exons
Exon 1.2 (A:25-32)
Exon 1.3 (A:32-134)
Exon 1.4 (A:134-134)
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1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary 1.3/1.4
4: Boundary 1.4/1.5
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000347785
1
ENSE00001145405
chr11:
60869930-60870087
158
CD5_HUMAN
1-19
19
0
-
-
1.2
ENST00000347785
2
ENSE00001145421
chr11:
60882528-60882566
39
CD5_HUMAN
19-32
14
1
A:25-32
8
1.3
ENST00000347785
3
ENSE00001145399
chr11:
60885647-60885952
306
CD5_HUMAN
32-134
103
1
A:32-134
103
1.4
ENST00000347785
4
ENSE00001119061
chr11:
60886387-60886449
63
CD5_HUMAN
134-155
22
1
A:134-134
1
1.5
ENST00000347785
5
ENSE00001119062
chr11:
60886706-60887047
342
CD5_HUMAN
155-269
115
0
-
-
1.6
ENST00000347785
6
ENSE00001145387
chr11:
60889083-60889376
294
CD5_HUMAN
269-367
99
0
-
-
1.7
ENST00000347785
7
ENSE00001145383
chr11:
60890379-60890504
126
CD5_HUMAN
367-409
43
0
-
-
1.8
ENST00000347785
8
ENSE00000721687
chr11:
60891356-60891409
54
CD5_HUMAN
409-427
19
0
-
-
1.9
ENST00000347785
9
ENSE00001198934
chr11:
60892504-60892623
120
CD5_HUMAN
427-467
41
0
-
-
1.10
ENST00000347785
10
ENSE00001198984
chr11:
60893223-60893313
91
CD5_HUMAN
467-495
29
0
-
-
1.11
ENST00000347785
11
ENSE00001397719
chr11:
60893760-60895319
1560
CD5_HUMAN
-
0
0
-
-
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CATH Domains
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_SRCR_2jopA01 (A:38-133)
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Clan
:
no clan defined [family: SRCR]
(5)
Family
:
SRCR
(5)
Homo sapiens (Human)
(3)
1a
SRCR-2jopA01
A:38-133
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Asymmetric Unit 1
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