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Asym. Unit
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Asym.Unit (349 KB)
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Models
(10 )
Title
:
SOLUTION STRUCTURE OF A ERCC1-XPA HETERODIMER
Authors
:
O. V. Tsodikov, D. Ivanov, B. Orelli, L. Staresincic, O. D. Scharer, G. Wagner
Date
:
07 Feb 07 (Deposition) - 30 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (10 x)
Keywords
:
Ercc1, Xpa, Ner, Recruitment, Dna Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
O. V. Tsodikov, D. Ivanov, B. Orelli, L. Staresincic, I. Shoshani, R. Oberman, O. D. Scharer, G. Wagner, T. Ellenberger
Structural Basis For The Recruitment Of Ercc1-Xpf To Nucleotide Excision Repair Complexes By Xpa
Embo J. V. 26 4768 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(6, 6)
Info
All Exons
Exon 1.3 (A:99-107)
Exon 1.4 (A:108-142)
Exon 1.5 (A:142-175)
Exon 1.6 (A:176-201)
Exon 1.7 (A:201-214)
Exon 2.2 (B:67-77)
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All Exon Boundaries
1: Boundary 1.2b/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7
6: Boundary 1.7/1.8
7: Boundary 2.1a/2.2
8: Boundary 2.2/2.3
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000300853
1a
ENSE00001048737
chr19:
45927177-45927039
139
ERCC1_HUMAN
-
0
0
-
-
1.2b
ENST00000300853
2b
ENSE00001270910
chr19:
45926639-45926528
112
ERCC1_HUMAN
1-35
35
0
-
-
1.3
ENST00000300853
3
ENSE00000749056
chr19:
45924651-45924436
216
ERCC1_HUMAN
36-107
72
1
A:99-107
9
1.4
ENST00000300853
4
ENSE00000749055
chr19:
45923685-45923582
104
ERCC1_HUMAN
108-142
35
1
A:108-142
35
1.5
ENST00000300853
5
ENSE00000749054
chr19:
45922455-45922356
100
ERCC1_HUMAN
142-175
34
1
A:142-175
34
1.6
ENST00000300853
6
ENSE00000749053
chr19:
45920155-45920079
77
ERCC1_HUMAN
176-201
26
1
A:176-201
26
1.7
ENST00000300853
7
ENSE00000749052
chr19:
45918218-45918119
100
ERCC1_HUMAN
201-234
34
1
A:201-214
14
1.8
ENST00000300853
8
ENSE00000749051
chr19:
45917292-45917221
72
ERCC1_HUMAN
235-258
24
0
-
-
1.9a
ENST00000300853
9a
ENSE00000469632
chr19:
45917003-45916935
69
ERCC1_HUMAN
259-281
23
0
-
-
1.10b
ENST00000300853
10b
ENSE00001270905
chr19:
45912983-45912872
112
ERCC1_HUMAN
282-297
16
0
-
-
2.1a
ENST00000375128
1a
ENSE00001465835
chr9:
100459639-100459403
237
XPA_HUMAN
1-58
58
0
-
-
2.2
ENST00000375128
2
ENSE00000805600
chr9:
100456041-100455931
111
XPA_HUMAN
58-95
38
1
B:67-77
11
2.3
ENST00000375128
3
ENSE00000805601
chr9:
100451921-100451816
106
XPA_HUMAN
95-130
36
0
-
-
2.4
ENST00000375128
4
ENSE00000805602
chr9:
100449543-100449378
166
XPA_HUMAN
130-185
56
0
-
-
2.5b
ENST00000375128
5b
ENSE00000805603
chr9:
100447322-100447205
118
XPA_HUMAN
186-225
40
0
-
-
2.8b
ENST00000375128
8b
ENSE00001846881
chr9:
100437869-100437191
679
XPA_HUMAN
225-273
49
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2jnwa1 (A:99-214)
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Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Restriction endonuclease-like
(209)
Superfamily
:
Restriction endonuclease-like
(170)
Family
:
XPF/Rad1/Mus81 nuclease
(9)
Protein domain
:
DNA excision repair protein ERCC-1
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2jnwa1
A:99-214
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CATH Domains
(0, 0)
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_Rad10_2jnwA01 (A:99-166)
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Clan
:
no clan defined [family: Rad10]
(2)
Family
:
Rad10
(2)
Homo sapiens (Human)
(2)
1a
Rad10-2jnwA01
A:99-166
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Asymmetric Unit 1
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