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2JKN
Asym. Unit
Info
Asym.Unit (159 KB)
Biol.Unit 1 (79 KB)
Biol.Unit 2 (78 KB)
Biol.Unit 3 (78 KB)
Biol.Unit 4 (77 KB)
Biol.Unit 5 (79 KB)
Biol.Unit 6 (79 KB)
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(1)
Title
:
DRAE ADHESIN IN COMPLEX WITH CHLORAMPHENICOL SUCCINATE ( TRIGONAL FORM)
Authors
:
D. M. Pettigrew, P. Roversi, S. G. Davies, A. J. Russell, S. M. Lea
Date
:
28 Aug 08 (Deposition) - 16 Dec 08 (Release) - 12 Sep 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Biol. Unit 3: C (3x)
Biol. Unit 4: D (3x)
Biol. Unit 5: E (3x)
Biol. Unit 6: F (3x)
Keywords
:
Cell Adhesion, Upec, Drae, Daec, Adhesin, Fimbrium, Haemagglutinin, Cell Projection, Fimbrial Adhesin, Chloramphenicol Succinate
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Pettigrew, P. Roversi, S. G. Davies, A. J. Russell, S. M. Lea
A Structural Study Of The Interaction Between The Dr Haemagglutinin Drae And Derivatives Of Chloramphenicol
Acta Crystallogr. , Sect. D V. 65 513 2009
[
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Hetero Components
(3, 30)
Info
All Hetero Components
1a: CHLORAMPHENICOL SUCCINATE (CL8a)
1b: CHLORAMPHENICOL SUCCINATE (CL8b)
1c: CHLORAMPHENICOL SUCCINATE (CL8c)
1d: CHLORAMPHENICOL SUCCINATE (CL8d)
1e: CHLORAMPHENICOL SUCCINATE (CL8e)
1f: CHLORAMPHENICOL SUCCINATE (CL8f)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL8
6
Ligand/Ion
CHLORAMPHENICOL SUCCINATE
2
EDO
12
Ligand/Ion
1,2-ETHANEDIOL
3
SO4
12
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:8 , GLY A:9 , THR A:10 , GLY A:24 , ASP A:25 , HOH A:2004 , HOH A:2006 , HOH A:2117 , HOH A:2118 , HOH A:2119
BINDING SITE FOR RESIDUE SO4 A1139
02
AC2
SOFTWARE
ASP A:52 , GLY A:106 , SER A:107 , HOH A:2054 , HOH A:2120 , ASP D:89
BINDING SITE FOR RESIDUE SO4 A1140
03
AC3
SOFTWARE
ALA A:38 , PRO A:40 , ILE A:41 , GLY A:42 , PRO A:43 , ILE A:111 , GLY A:113 , ILE A:114 , TYR A:115 , ARG D:22 , LEU D:26 , LEU D:49
BINDING SITE FOR RESIDUE CL8 A1141
04
AC4
SOFTWARE
PRO A:4 , SER A:5 , GLY A:6 , VAL A:15 , PRO A:125 , GLY A:126
BINDING SITE FOR RESIDUE EDO A1142
05
AC5
SOFTWARE
SER A:74 , ASN A:76 , ASP A:79 , PRO A:125 , HOH A:2121
BINDING SITE FOR RESIDUE EDO A1143
06
AC6
SOFTWARE
THR B:8 , GLY B:9 , THR B:10 , GLY B:24 , ASP B:25 , HOH B:2004 , HOH B:2114 , HOH B:2115 , HOH B:2116
BINDING SITE FOR RESIDUE SO4 B1139
07
AC7
SOFTWARE
ASP B:52 , GLY B:106 , SER B:107 , HOH B:2054 , HOH B:2117 , ASP F:89 , ASN F:90
BINDING SITE FOR RESIDUE SO4 B1140
08
AC8
SOFTWARE
ALA B:38 , PRO B:40 , ILE B:41 , GLY B:42 , PRO B:43 , GLY B:113 , ILE B:114 , TYR B:115 , ARG F:22 , LEU F:26
BINDING SITE FOR RESIDUE CL8 B1141
09
AC9
SOFTWARE
SER B:5 , GLY B:6 , VAL B:15 , PRO B:125 , GLY B:126
BINDING SITE FOR RESIDUE EDO B1142
10
BC1
SOFTWARE
SER B:74 , ASN B:76 , ASP B:79 , PRO B:125 , HOH B:2118
BINDING SITE FOR RESIDUE EDO B1143
11
BC2
SOFTWARE
THR C:8 , GLY C:9 , THR C:10 , GLY C:24 , ASP C:25 , HOH C:2005 , HOH C:2007 , HOH C:2019 , HOH C:2111
BINDING SITE FOR RESIDUE SO4 C1139
12
BC3
SOFTWARE
ASP C:52 , GLY C:106 , SER C:107 , HOH C:2052 , HOH C:2054 , ASP E:89
BINDING SITE FOR RESIDUE SO4 C1140
13
BC4
SOFTWARE
ALA C:38 , PRO C:40 , ILE C:41 , GLY C:42 , PRO C:43 , GLY C:113 , ILE C:114 , TYR C:115 , ARG E:22 , LEU E:26 , LEU E:49
BINDING SITE FOR RESIDUE CL8 C1141
14
BC5
SOFTWARE
SER C:5 , GLY C:6 , VAL C:15 , THR C:16 , PRO C:125 , GLY C:126
BINDING SITE FOR RESIDUE EDO C1142
15
BC6
SOFTWARE
SER C:74 , ASN C:76 , ASP C:79 , PRO C:125 , HOH C:2112
BINDING SITE FOR RESIDUE EDO C1143
16
BC7
SOFTWARE
THR D:8 , GLY D:9 , THR D:10 , GLY D:24 , ASP D:25 , HOH D:2007 , HOH D:2023 , HOH D:2112
BINDING SITE FOR RESIDUE SO4 D1139
17
BC8
SOFTWARE
ASP A:89 , ASN A:90 , ASP D:52 , GLY D:106 , SER D:107 , HOH D:2113 , HOH D:2114
BINDING SITE FOR RESIDUE SO4 D1140
18
BC9
SOFTWARE
ARG A:22 , LEU A:26 , ALA D:38 , PRO D:40 , ILE D:41 , GLY D:42 , PRO D:43 , ILE D:111 , GLY D:113 , ILE D:114 , TYR D:115
BINDING SITE FOR RESIDUE CL8 D1141
19
CC1
SOFTWARE
PRO D:4 , SER D:5 , GLY D:6 , VAL D:15 , PRO D:125 , GLY D:126
BINDING SITE FOR RESIDUE EDO D1142
20
CC2
SOFTWARE
SER D:74 , ASN D:76 , ASP D:79 , PRO D:125 , HOH D:2115
BINDING SITE FOR RESIDUE EDO D1143
21
CC3
SOFTWARE
THR E:8 , GLY E:9 , THR E:10 , GLY E:24 , ASP E:25 , HOH E:2005 , HOH E:2006 , HOH E:2118 , HOH E:2119
BINDING SITE FOR RESIDUE SO4 E1139
22
CC4
SOFTWARE
ASP C:89 , ASN C:90 , ASP E:52 , GLY E:106 , SER E:107 , HOH E:2057 , HOH E:2120
BINDING SITE FOR RESIDUE SO4 E1140
23
CC5
SOFTWARE
ARG C:22 , LEU C:26 , ALA E:38 , PRO E:40 , ILE E:41 , GLY E:42 , PRO E:43 , ILE E:111 , GLY E:113 , ILE E:114 , TYR E:115
BINDING SITE FOR RESIDUE CL8 E1141
24
CC6
SOFTWARE
PRO E:4 , SER E:5 , GLY E:6 , VAL E:15 , PRO E:125 , GLY E:126
BINDING SITE FOR RESIDUE EDO E1142
25
CC7
SOFTWARE
SER E:74 , ASN E:76 , ASP E:79 , PRO E:125 , HOH E:2121
BINDING SITE FOR RESIDUE EDO E1143
26
CC8
SOFTWARE
THR F:8 , GLY F:9 , THR F:10 , GLY F:24 , ASP F:25 , HOH F:2111 , HOH F:2112 , HOH F:2113
BINDING SITE FOR RESIDUE SO4 F1140
27
CC9
SOFTWARE
ASP B:89 , ASP F:52 , GLY F:106 , SER F:107 , HOH F:2051 , HOH F:2114
BINDING SITE FOR RESIDUE SO4 F1141
28
DC1
SOFTWARE
ARG B:22 , LEU B:26 , ALA F:38 , PRO F:40 , ILE F:41 , GLY F:42 , PRO F:43 , GLY F:113 , ILE F:114 , TYR F:115
BINDING SITE FOR RESIDUE CL8 F1142
29
DC2
SOFTWARE
PRO F:4 , SER F:5 , GLY F:6 , VAL F:15 , PRO F:125 , GLY F:126
BINDING SITE FOR RESIDUE EDO F1143
30
DC3
SOFTWARE
SER F:74 , ASN F:76 , ASP F:79 , PRO F:125 , HOH F:2115
BINDING SITE FOR RESIDUE EDO F1144
[
close Site info
]
SAPs(SNPs)/Variants
(1, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_DRAA_ECOLX_001 (R22Y, chain A/B/C/D/E/F, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_DRAA_ECOLX_001
*
R
43
Y
DRAA_ECOLX
---
---
A/B/C/D/E/F
R
22
Y
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d2jkna_ (A:)
1b: SCOP_d2jknb_ (B:)
1c: SCOP_d2jknc_ (C:)
1d: SCOP_d2jknd_ (D:)
1e: SCOP_d2jkne_ (E:)
1f: SCOP_d2jknf_ (F:)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
Bacterial adhesins
(93)
Family
:
Dr-family adhesin
(11)
Protein domain
:
DraA/Afimbrial adhesin Afa-III
(11)
Escherichia coli [TaxId: 562]
(11)
1a
d2jkna_
A:
1b
d2jknb_
B:
1c
d2jknc_
C:
1d
d2jknd_
D:
1e
d2jkne_
E:
1f
d2jknf_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_2jknA00 (A:0-138)
1b: CATH_2jknB00 (B:0-138)
1c: CATH_2jknC00 (C:0-138)
1d: CATH_2jknD00 (D:0-138)
1e: CATH_2jknE00 (E:0-138)
1f: CATH_2jknF00 (F:0-139)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Afimbrial adhesin afa-iii.
(12)
Escherichia coli. Organism_taxid: 562. Strain: ih11128. Variant: o75:k5:h. Cell_line: m15.
(4)
1a
2jknA00
A:0-138
1b
2jknB00
B:0-138
1c
2jknC00
C:0-138
1d
2jknD00
D:0-138
1e
2jknE00
E:0-138
1f
2jknF00
F:0-139
[
close CATH info
]
Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Adhesin_Dr_2jknF01 (F:2-139)
1b: PFAM_Adhesin_Dr_2jknF02 (F:2-139)
1c: PFAM_Adhesin_Dr_2jknF03 (F:2-139)
1d: PFAM_Adhesin_Dr_2jknF04 (F:2-139)
1e: PFAM_Adhesin_Dr_2jknF05 (F:2-139)
1f: PFAM_Adhesin_Dr_2jknF06 (F:2-139)
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Clan
:
Adhesin
(36)
Family
:
Adhesin_Dr
(9)
Escherichia coli
(9)
1a
Adhesin_Dr-2jknF01
F:2-139
1b
Adhesin_Dr-2jknF02
F:2-139
1c
Adhesin_Dr-2jknF03
F:2-139
1d
Adhesin_Dr-2jknF04
F:2-139
1e
Adhesin_Dr-2jknF05
F:2-139
1f
Adhesin_Dr-2jknF06
F:2-139
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