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2JIX
Biol. Unit 1
Info
Asym.Unit (304 KB)
Biol.Unit 1 (298 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ABT-007 FAB FRAGMENT WITH THE SOLUBLE DOMAIN OF EPO RECEPTOR
Authors
:
Z. Liu, V. S. Stoll, P. Devries, C. G. Jakob, N. Xie, R. L. Simmer, S. E. Lac D. A. Egan, J. E. Harlan, R. R. Lesniewski, E. B. Reilly
Date
:
02 Jul 07 (Deposition) - 10 Jul 07 (Release) - 30 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,L
Biol. Unit 1: A,B,C,D,E,F,G,H,L (1x)
Keywords
:
Immune System, Receptor, Transmembrane, Receptor Soluble Domain, Antibody, Receptor-Immune System Complex
(Keyword Search:
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Reference
:
Z. Liu, V. S. Stoll, P. Devries, C. G. Jakob, N. Xie, R. L. Simmer, S. E. Lacy, D. A. Egan, J. E. Harlan, R. R. Lesniewski, E. B. Reilly
A Potent Erythropoietin-Mimicking Human Antibody Interacts Through A Novel Binding Site.
Blood V. 110 2408 2007
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Hetero Components
(0, 0)
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Sites
(0, 0)
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(2, 6)
Info
All PROSITE Patterns/Profiles
1: FN3 (B:123-223,C:123-223,E:123-223)
2: HEMATOPO_REC_L_F1 (B:138-218,C:138-218,E:138-218)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FN3
PS50853
Fibronectin type-III domain profile.
EPOR_HUMAN
147-247
3
B:123-223
C:123-223
E:123-223
2
HEMATOPO_REC_L_F1
PS01352
Long hematopoietin receptor, single chain family signature.
EPOR_HUMAN
162-242
3
B:138-218
C:138-218
E:138-218
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(3, 12)
Info
All SCOP Domains
1a: SCOP_d2jixb1 (B:10-116)
1b: SCOP_d2jixb2 (B:117-224)
1c: SCOP_d2jixc1 (C:10-116)
1d: SCOP_d2jixc2 (C:117-224)
1e: SCOP_d2jixe1 (E:10-116)
1f: SCOP_d2jixe2 (E:117-224)
2a: SCOP_d2jixd2 (D:117-217)
2b: SCOP_d2jixf2 (F:117-217)
2c: SCOP_d2jixh2 (H:117-217)
3a: SCOP_d2jixd1 (D:1-116)
3b: SCOP_d2jixf1 (F:1-116)
3c: SCOP_d2jixh1 (H:1-116)
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Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Fibronectin type III
(212)
Family
:
Fibronectin type III
(180)
Protein domain
:
Erythropoietin (EPO) receptor
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
1a
d2jixb1
B:10-116
1b
d2jixb2
B:117-224
1c
d2jixc1
C:10-116
1d
d2jixc2
C:117-224
1e
d2jixe1
E:10-116
1f
d2jixe2
E:117-224
Superfamily
:
Immunoglobulin
(5995)
Family
:
C1 set domains (antibody constant domain-like)
(3013)
Protein domain
:
Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
(608)
Human (Homo sapiens) [TaxId: 9606]
(179)
2a
d2jixd2
D:117-217
2b
d2jixf2
F:117-217
2c
d2jixh2
H:117-217
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Synthetic construct [TaxId: 32630]
(3)
3a
d2jixd1
D:1-116
3b
d2jixf1
F:1-116
3c
d2jixh1
H:1-116
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CATH Domains
(1, 18)
Info
all CATH domains
1a: CATH_2jixA02 (A:109-214)
1b: CATH_2jixG02 (G:109-214)
1c: CATH_2jixL02 (L:109-214)
1d: CATH_2jixA01 (A:1-108)
1e: CATH_2jixG01 (G:1-108)
1f: CATH_2jixL01 (L:1-108)
1g: CATH_2jixD02 (D:117-215)
1h: CATH_2jixF02 (F:117-215)
1i: CATH_2jixH02 (H:117-215)
1j: CATH_2jixD01 (D:1-116)
1k: CATH_2jixF01 (F:1-116)
1l: CATH_2jixH01 (H:1-116)
1m: CATH_2jixB02 (B:119-220)
1n: CATH_2jixC02 (C:119-220)
1o: CATH_2jixE02 (E:119-220)
1p: CATH_2jixB01 (B:22-118)
1q: CATH_2jixC01 (C:22-118)
1r: CATH_2jixE01 (E:22-118)
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Organisms
(
)
(
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Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Escherichia coli. Organism_taxid: 562.
(10)
1a
2jixA02
A:109-214
1b
2jixG02
G:109-214
1c
2jixL02
L:109-214
1d
2jixA01
A:1-108
1e
2jixG01
G:1-108
1f
2jixL01
L:1-108
1g
2jixD02
D:117-215
1h
2jixF02
F:117-215
1i
2jixH02
H:117-215
1j
2jixD01
D:1-116
1k
2jixF01
F:1-116
1l
2jixH01
H:1-116
1m
2jixB02
B:119-220
1n
2jixC02
C:119-220
1o
2jixE02
E:119-220
1p
2jixB01
B:22-118
1q
2jixC01
C:22-118
1r
2jixE01
E:22-118
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_EpoR_lig_bind_2jixE01 (E:13-116)
1b: PFAM_EpoR_lig_bind_2jixE02 (E:13-116)
1c: PFAM_EpoR_lig_bind_2jixE03 (E:13-116)
2a: PFAM_fn3_2jixE04 (E:122-208)
2b: PFAM_fn3_2jixE05 (E:122-208)
2c: PFAM_fn3_2jixE06 (E:122-208)
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Clan
:
E-set
(290)
Family
:
EpoR_lig-bind
(10)
Homo sapiens (Human)
(9)
1a
EpoR_lig-bind-2jixE01
E:13-116
1b
EpoR_lig-bind-2jixE02
E:13-116
1c
EpoR_lig-bind-2jixE03
E:13-116
Family
:
fn3
(66)
Homo sapiens (Human)
(52)
2a
fn3-2jixE04
E:122-208
2b
fn3-2jixE05
E:122-208
2c
fn3-2jixE06
E:122-208
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Asymmetric Unit 1
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Asym.Unit (304 KB)
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