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2JIH
Biol. Unit 1
Info
Asym.Unit (105 KB)
Biol.Unit 1 (51 KB)
Biol.Unit 2 (50 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN ADAMTS-1 CATALYTIC DOMAIN AND CYSTEINE-RICH DOMAIN (COMPLEX-FORM)
Authors
:
S. Gerhardt, G. Hassall, P. Hawtin, E. Mccall, L. Flavell, C. Minshull, D. Hargreaves, A. Ting, R. A. Pauptit, A. E. Parker, W. M. Abbott
Date
:
28 Jun 07 (Deposition) - 15 Jan 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Zinc, Zymogen, Protease, Adamts-1, Hydrolase, Metalloprotease, Heparin-Binding, Metalloproteinase, Metzincin, Polymorphism, Glycoprotein, Metal-Binding, Extracellular Matrix, Cleavage On Pair Of Basic Residues
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Gerhardt, G. Hassall, P. Hawtin, E. Mccall, L. Flavell, C. Minshull, D. Hargreaves, A. Ting, R. A. Pauptit, A. E. Parker, W. M. Abbott
Crystal Structures Of Human Adamts-1 Reveal A Conserved Catalytic Domain And A Disintegrin-Like Domain With A Fold Homologous To Cysteine-Rich Domains.
J. Mol. Biol. V. 373 891 2007
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (2S,3R)-N~4~-[(1S)-2,2-DIMETHYL-1-... (097a)
1b: (2S,3R)-N~4~-[(1S)-2,2-DIMETHYL-1-... (097b)
2a: CADMIUM ION (CDa)
2b: CADMIUM ION (CDb)
2c: CADMIUM ION (CDc)
2d: CADMIUM ION (CDd)
2e: CADMIUM ION (CDe)
2f: CADMIUM ION (CDf)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
5a: NICKEL (II) ION (NIa)
5b: NICKEL (II) ION (NIb)
5c: NICKEL (II) ION (NIc)
5d: NICKEL (II) ION (NId)
5e: NICKEL (II) ION (NIe)
5f: NICKEL (II) ION (NIf)
5g: NICKEL (II) ION (NIg)
5h: NICKEL (II) ION (NIh)
5i: NICKEL (II) ION (NIi)
5j: NICKEL (II) ION (NIj)
5k: NICKEL (II) ION (NIk)
5l: NICKEL (II) ION (NIl)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
097
1
Ligand/Ion
(2S,3R)-N~4~-[(1S)-2,2-DIMETHYL-1-(METHYLCARBAMOYL)PROPYL]-N~1~,2-DIHYDROXY-3-(2-METHYLPROPYL)BUTANEDIAMIDE
2
CD
-1
Ligand/Ion
CADMIUM ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
NI
-1
Ligand/Ion
NICKEL (II) ION
6
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: BC1 (SOFTWARE)
09: BC2 (SOFTWARE)
10: BC5 (SOFTWARE)
11: BC6 (SOFTWARE)
12: BC7 (SOFTWARE)
13: BC8 (SOFTWARE)
14: BC9 (SOFTWARE)
15: CC1 (SOFTWARE)
16: CC2 (SOFTWARE)
17: CC7 (SOFTWARE)
18: CC8 (SOFTWARE)
19: CC9 (SOFTWARE)
20: DC3 (SOFTWARE)
21: DC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:368 , THR A:369 , LEU A:370 , GLY A:371 , HIS A:401 , GLU A:402 , HIS A:405 , HIS A:411 , ALA A:431 , SER A:432 , MET A:433 , LEU A:434 , ZN A:1553 , HOH A:2066 , HOH A:2122
BINDING SITE FOR RESIDUE 097 A1001
02
AC3
SOFTWARE
HIS A:401 , HIS A:405 , HIS A:411 , 097 A:1001
BINDING SITE FOR RESIDUE ZN A1553
03
AC5
SOFTWARE
GLU A:261 , ASP A:344 , ASP A:465 , HOH A:2038 , HOH A:2081
BINDING SITE FOR RESIDUE CD A1554
04
AC6
SOFTWARE
GLU A:315 , GLU A:320 , HOH A:2023 , HOH A:2026
BINDING SITE FOR RESIDUE CD A1555
05
AC7
SOFTWARE
GLU A:494 , HIS B:313 , HOH B:2010 , HOH B:2022 , HOH B:2028
BINDING SITE FOR RESIDUE NI A1556
06
AC8
SOFTWARE
HIS A:280 , HOH A:2046 , ASP B:483
BINDING SITE FOR RESIDUE CD A1557
07
AC9
SOFTWARE
GLU A:261 , ASP A:344 , ASP A:351 , CYS A:462 , ASP A:465 , HOH A:2080
BINDING SITE FOR RESIDUE CD A1558
08
BC1
SOFTWARE
ASP A:483 , HOH A:2089 , HIS B:280
BINDING SITE FOR RESIDUE CD B1555
09
BC2
SOFTWARE
HIS A:313 , GLU B:494 , ASP B:495
BINDING SITE FOR RESIDUE NI B1556
10
BC5
SOFTWARE
HIS A:313 , HOH A:2009 , GLU B:494
BINDING SITE FOR RESIDUE NI B1559
11
BC6
SOFTWARE
GLU A:320 , HOH A:2024 , HOH A:2025
BINDING SITE FOR RESIDUE NI A1559
12
BC7
SOFTWARE
HIS A:339 , HOH A:2035
BINDING SITE FOR RESIDUE MG A1560
13
BC8
SOFTWARE
HIS A:428 , HOH A:2064
BINDING SITE FOR RESIDUE NI A1561
14
BC9
SOFTWARE
GLU A:494 , ASP A:495 , HIS B:313
BINDING SITE FOR RESIDUE NI A1562
15
CC1
SOFTWARE
HIS A:498 , HOH A:2100
BINDING SITE FOR RESIDUE NI A1563
16
CC2
SOFTWARE
HIS A:525 , HOH A:2073 , HOH A:2104
BINDING SITE FOR RESIDUE NI A1564
17
CC7
SOFTWARE
ASP A:360 , LEU A:361 , CYS A:367 , THR A:369 , GLU A:389 , NA A:1566
BINDING SITE FOR RESIDUE NA A1565
18
CC8
SOFTWARE
ASP A:360 , CYS A:367 , NA A:1565 , HOH A:2050
BINDING SITE FOR RESIDUE NA A1566
19
CC9
SOFTWARE
PRO A:410 , ASP A:412 , MET A:430 , SER A:447
BINDING SITE FOR RESIDUE NA A1567
20
DC3
SOFTWARE
HIS A:439 , HOH A:2069
BINDING SITE FOR RESIDUE NI A1568
21
DC4
SOFTWARE
VAL A:518 , LEU A:519 , HIS B:525
BINDING SITE FOR RESIDUE MG A1569
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: ADAM_MEPRO (A:258-467)
2: ZINC_PROTEASE (A:398-407)
3: TSP1 (A:550-551)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADAM_MEPRO
PS50215
ADAM type metalloprotease domain profile.
ATS1_HUMAN
258-467
1
A:258-467
-
2
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ATS1_HUMAN
398-407
1
A:398-407
-
3
TSP1
PS50092
Thrombospondin type-1 (TSP1) repeat profile.
ATS1_HUMAN
559-614
908-967
854-905
1
A:550-551
-
-
-
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Reprolysin_2jihB01 (B:258-467)
1b: PFAM_Reprolysin_2jihB02 (B:258-467)
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Clans
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(
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Families
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(
)
Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Reprolysin
(9)
Homo sapiens (Human)
(9)
1a
Reprolysin-2jihB01
B:258-467
1b
Reprolysin-2jihB02
B:258-467
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Chain A
Asymmetric Unit 1
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Asym.Unit (105 KB)
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