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2IY0
Asym. Unit
Info
Asym.Unit (80 KB)
Biol.Unit 1 (74 KB)
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(1)
Title
:
SENP1 (MUTANT) SUMO1 RANGAP
Authors
:
L. Shen, C. Dong, J. H. Naismith
Date
:
11 Jul 06 (Deposition) - 07 Aug 06 (Release) - 28 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.77
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Hydrolase-Hydrolase Activator Complex, Hydrolase-Activator Complex, Protease, Hydrolase, Ubiquitin, Thiol Protease, Leucine- Rich Repeat, Ubl Conjugation Pathway, Protein Protein Complex, Gtpase Activation, Hydrolase-Activator Complex Ubl Conjugation, Nuclear Protein, Phosphorylation
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Shen, M. H. Tatham, C. Dong, A. Zagorska, J. H. Naismith, R. T. Hay
Sumo Protease Senp1 Induces Isomerization Of The Scissile Peptide Bond.
Nat. Struct. Mol. Biol. V. 13 1069 2006
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ULP_PROTEASE (A:450-614)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ULP_PROTEASE
PS50600
Ubiquitin-like protease family profile.
SENP1_HUMAN
450-614
1
A:450-614
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Exons
(9, 9)
Info
All Exons
Exon 1.16b (C:432-460)
Exon 1.17b (C:461-495)
Exon 1.18 (C:495-524)
Exon 1.19 (C:525-565)
Exon 1.20c (C:565-587)
Exon 2.5 (B:22-29)
Exon 2.6b (B:30-55)
Exon 2.7b (B:56-79)
Exon 2.9j (B:80-97)
View:
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All Exon Boundaries
01: Boundary 1.15/1.16b
02: Boundary 1.16b/1.17b
03: Boundary 1.17b/1.18
04: Boundary 1.18/1.19
05: Boundary 1.19/1.20c
06: Boundary 1.20c/-
07: Boundary 2.1a/2.5
08: Boundary 2.5/2.6b
09: Boundary 2.6b/2.7b
10: Boundary 2.7b/2.9j
11: Boundary 2.9j/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.3
ENST00000356244
3
ENSE00001525423
chr22:
41682255-41681990
266
RAGP1_HUMAN
-
0
0
-
-
1.6e
ENST00000356244
6e
ENSE00002184389
chr22:
41677086-41676937
150
RAGP1_HUMAN
1-38
38
0
-
-
1.7a
ENST00000356244
7a
ENSE00000655593
chr22:
41670731-41670604
128
RAGP1_HUMAN
38-80
43
0
-
-
1.8
ENST00000356244
8
ENSE00002178724
chr22:
41664160-41664101
60
RAGP1_HUMAN
81-100
20
0
-
-
1.9b
ENST00000356244
9b
ENSE00000655579
chr22:
41660847-41660668
180
RAGP1_HUMAN
101-160
60
0
-
-
1.10
ENST00000356244
10
ENSE00000655571
chr22:
41657584-41657450
135
RAGP1_HUMAN
161-205
45
0
-
-
1.11
ENST00000356244
11
ENSE00000655562
chr22:
41654110-41653952
159
RAGP1_HUMAN
206-258
53
0
-
-
1.12
ENST00000356244
12
ENSE00000655554
chr22:
41652828-41652715
114
RAGP1_HUMAN
259-296
38
0
-
-
1.13
ENST00000356244
13
ENSE00001388340
chr22:
41652294-41652195
100
RAGP1_HUMAN
297-330
34
0
-
-
1.14
ENST00000356244
14
ENSE00002167356
chr22:
41652109-41652025
85
RAGP1_HUMAN
330-358
29
0
-
-
1.15
ENST00000356244
15
ENSE00001615125
chr22:
41650498-41650312
187
RAGP1_HUMAN
358-420
63
0
-
-
1.16b
ENST00000356244
16b
ENSE00001786527
chr22:
41648995-41648876
120
RAGP1_HUMAN
421-460
40
1
C:432-460
29
1.17b
ENST00000356244
17b
ENSE00001635042
chr22:
41647113-41647011
103
RAGP1_HUMAN
461-495
35
1
C:461-495
35
1.18
ENST00000356244
18
ENSE00001708342
chr22:
41645821-41645733
89
RAGP1_HUMAN
495-524
30
1
C:495-524
30
1.19
ENST00000356244
19
ENSE00001792763
chr22:
41645455-41645334
122
RAGP1_HUMAN
525-565
41
1
C:525-565
41
1.20c
ENST00000356244
20c
ENSE00001563055
chr22:
41642676-41641615
1062
RAGP1_HUMAN
565-587
23
1
C:565-587
23
2.1a
ENST00000392246
1a
ENSE00001771214
chr2:
203103331-203103163
169
SUMO1_HUMAN
1-4
4
0
-
-
2.5
ENST00000392246
5
ENSE00001634753
chr2:
203084829-203084755
75
SUMO1_HUMAN
5-29
25
1
B:22-29
8
2.6b
ENST00000392246
6b
ENSE00001733147
chr2:
203079157-203079080
78
SUMO1_HUMAN
30-55
26
1
B:30-55
26
2.7b
ENST00000392246
7b
ENSE00001777388
chr2:
203075529-203075458
72
SUMO1_HUMAN
56-79
24
1
B:56-79
24
2.9j
ENST00000392246
9j
ENSE00001390654
chr2:
203072044-203070903
1142
SUMO1_HUMAN
80-101
22
1
B:80-97
18
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SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2iy0c1 (C:432-587)
2a: SCOP_d2iy0b_ (B:)
3a: SCOP_d2iy0a1 (A:419-643)
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Protein Domains
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(
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Organisms
(
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(
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Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
(13)
Family
:
Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
(13)
Protein domain
:
Ran-GTPase activating protein 1 (RanGAP1), C-terminal domain
(10)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2iy0c1
C:432-587
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
Ubiquitin-like
(546)
Family
:
automated matches
(55)
Protein domain
:
automated matches
(55)
Human (Homo sapiens) [TaxId: 9606]
(39)
2a
d2iy0b_
B:
Fold
:
Cysteine proteinases
(392)
Superfamily
:
Cysteine proteinases
(392)
Family
:
Adenain-like
(26)
Protein domain
:
Sentrin-specific protease 1
(6)
Human (Homo sapiens) [TaxId: 9606]
(6)
3a
d2iy0a1
A:419-643
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2iy0B00 (B:22-97)
2a: CATH_2iy0C00 (C:432-587)
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Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1
(286)
Human (Homo sapiens)
(177)
1a
2iy0B00
B:22-97
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.200, no name defined]
(8)
Human (Homo sapiens)
(8)
2a
2iy0C00
C:432-587
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Pfam Domains
(0, 0)
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