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2ID0
Biol. Unit 4
Info
Asym.Unit (412 KB)
Biol.Unit 1 (104 KB)
Biol.Unit 2 (107 KB)
Biol.Unit 3 (107 KB)
Biol.Unit 4 (105 KB)
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(1)
Title
:
ESCHERICHIA COLI RNASE II
Authors
:
Y. Zuo, J. Zhang, Y. Wang, A. Malhotra
Date
:
13 Sep 06 (Deposition) - 03 Oct 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.35
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Rnase, Exoribonuclease, Ribonuclease, Exonuclease, Nuclease, Hydrolyase, Mrna Decay, Rnr Family, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Zuo, H. A. Vincent, J. Zhang, Y. Wang, M. P. Deutscher, A. Malhotra
Structural Basis For Processivity And Single-Strand Specificity Of Rnase Ii.
Mol. Cell V. 24 149 2006
[
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Hetero Components
(1, 14)
Info
All Hetero Components
1a: MANGANESE (II) ION (MNa)
1b: MANGANESE (II) ION (MNb)
1c: MANGANESE (II) ION (MNc)
1d: MANGANESE (II) ION (MNd)
2a: SELENOMETHIONINE (MSEa)
2aa: SELENOMETHIONINE (MSEaa)
2ab: SELENOMETHIONINE (MSEab)
2ac: SELENOMETHIONINE (MSEac)
2ad: SELENOMETHIONINE (MSEad)
2ae: SELENOMETHIONINE (MSEae)
2af: SELENOMETHIONINE (MSEaf)
2ag: SELENOMETHIONINE (MSEag)
2ah: SELENOMETHIONINE (MSEah)
2ai: SELENOMETHIONINE (MSEai)
2aj: SELENOMETHIONINE (MSEaj)
2ak: SELENOMETHIONINE (MSEak)
2al: SELENOMETHIONINE (MSEal)
2am: SELENOMETHIONINE (MSEam)
2an: SELENOMETHIONINE (MSEan)
2ao: SELENOMETHIONINE (MSEao)
2ap: SELENOMETHIONINE (MSEap)
2aq: SELENOMETHIONINE (MSEaq)
2ar: SELENOMETHIONINE (MSEar)
2as: SELENOMETHIONINE (MSEas)
2at: SELENOMETHIONINE (MSEat)
2au: SELENOMETHIONINE (MSEau)
2av: SELENOMETHIONINE (MSEav)
2aw: SELENOMETHIONINE (MSEaw)
2ax: SELENOMETHIONINE (MSEax)
2ay: SELENOMETHIONINE (MSEay)
2az: SELENOMETHIONINE (MSEaz)
2b: SELENOMETHIONINE (MSEb)
2ba: SELENOMETHIONINE (MSEba)
2bb: SELENOMETHIONINE (MSEbb)
2bc: SELENOMETHIONINE (MSEbc)
2bd: SELENOMETHIONINE (MSEbd)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
2q: SELENOMETHIONINE (MSEq)
2r: SELENOMETHIONINE (MSEr)
2s: SELENOMETHIONINE (MSEs)
2t: SELENOMETHIONINE (MSEt)
2u: SELENOMETHIONINE (MSEu)
2v: SELENOMETHIONINE (MSEv)
2w: SELENOMETHIONINE (MSEw)
2x: SELENOMETHIONINE (MSEx)
2y: SELENOMETHIONINE (MSEy)
2z: SELENOMETHIONINE (MSEz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MN
-1
Ligand/Ion
MANGANESE (II) ION
2
MSE
14
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(1, 1)
Info
All Sites
1: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
ASP D:201 , ASP D:209 , ASP D:210
BINDING SITE FOR RESIDUE MN D 1004
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RIBONUCLEASE_II (D:484-508)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBONUCLEASE_II
PS01175
Ribonuclease II family signature.
RNB_ECOLI
484-508
1
-
-
-
D:484-508
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2id0a1 (A:558-644)
1b: SCOP_d2id0c2 (C:83-172)
1c: SCOP_d2id0c3 (C:5-82)
1d: SCOP_d2id0d1 (D:558-644)
1e: SCOP_d2id0d2 (D:83-172)
1f: SCOP_d2id0d3 (D:5-82)
1g: SCOP_d2id0a2 (A:83-172)
1h: SCOP_d2id0a3 (A:5-82)
1i: SCOP_d2id0b1 (B:558-644)
1j: SCOP_d2id0b2 (B:83-172)
1k: SCOP_d2id0b3 (B:5-82)
1l: SCOP_d2id0c1 (C:558-644)
2a: SCOP_d2id0a4 (A:173-557)
2b: SCOP_d2id0b4 (B:173-557)
2c: SCOP_d2id0c4 (C:173-557)
2d: SCOP_d2id0d4 (D:173-557)
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Classes
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)
(
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(
)
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(
)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
OB-fold
(1179)
Superfamily
:
Nucleic acid-binding proteins
(590)
Family
:
Cold shock DNA-binding domain-like
(310)
Protein domain
:
Exoribonuclease 2, RNB
(3)
Escherichia coli [TaxId: 562]
(3)
1a
d2id0a1
A:558-644
1b
d2id0c2
C:83-172
1c
d2id0c3
C:5-82
1d
d2id0d1
D:558-644
1e
d2id0d2
D:83-172
1f
d2id0d3
D:5-82
1g
d2id0a2
A:83-172
1h
d2id0a3
A:5-82
1i
d2id0b1
B:558-644
1j
d2id0b2
B:83-172
1k
d2id0b3
B:5-82
1l
d2id0c1
C:558-644
Family
:
RNB domain-like
(6)
Protein domain
:
Exoribonuclease 2, RNB
(3)
Escherichia coli [TaxId: 562]
(3)
2a
d2id0a4
A:173-557
2b
d2id0b4
B:173-557
2c
d2id0c4
C:173-557
2d
d2id0d4
D:173-557
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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Chain D
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Show PDB file:
Asym.Unit (412 KB)
Header - Asym.Unit
Biol.Unit 1 (104 KB)
Header - Biol.Unit 1
Biol.Unit 2 (107 KB)
Header - Biol.Unit 2
Biol.Unit 3 (107 KB)
Header - Biol.Unit 3
Biol.Unit 4 (105 KB)
Header - Biol.Unit 4
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