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2I6T
Asym. Unit
Info
Asym.Unit (101 KB)
Biol.Unit 1 (189 KB)
Biol.Unit 2 (96 KB)
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(1)
Title
:
ORTHORHOMBIC STRUCTURE OF THE LDH DOMAIN OF HUMAN UBIQUITIN-CONJUGATING ENZYME E2-LIKE ISOFORM A
Authors
:
J. R. Walker, G. V. Avvakumov, S. Xue, E. M. Newman, P. J. Finerty Jr. , C. Cole, W. Tempel, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwa A. Bochkarev, S. Dhe-Paganon
Date
:
29 Aug 06 (Deposition) - 24 Oct 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Biol. Unit 2: A,B (1x)
Keywords
:
L-Lactate Dehydrogenase, Oxidoreductase, Ubiquitin-Protein Ligase, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. V. Avvakumov, J. R. Walker, S. Xue, E. M. Newman, P. J. Finerty Jr. , C. Butler-Cole, W. Tempel, J. Weigelt, M. Sundstrom, C. H. Arrowsmith A. M. Edwards, A. Bochkarev, S. Dhe-Paganon
Structural Investigation Into The L-Lactate Dehydrogenase Domain Of Human Ubiquitin-Conjugating Enzyme E2-Like Isofor A
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
7
Ligand/Ion
GLYCEROL
2
SO4
4
Ligand/Ion
SULFATE ION
[
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]
Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:282 , ALA A:336 , GLN A:337 , THR A:338 , SER A:339 , GLU A:362 , HOH A:497 , HOH A:549
BINDING SITE FOR RESIDUE SO4 A 1
02
AC2
SOFTWARE
HIS B:282 , ALA B:336 , GLN B:337 , THR B:338 , SER B:339 , GLU B:362 , HOH B:498
BINDING SITE FOR RESIDUE SO4 B 2
03
AC3
SOFTWARE
GOL B:8 , HIS B:282 , SER B:365 , SER B:368 , TYR B:418 , HOH B:494 , HOH B:507
BINDING SITE FOR RESIDUE SO4 B 3
04
AC4
SOFTWARE
GOL A:7 , HIS A:282 , VAL A:364 , SER A:365 , SER A:368 , TYR A:418 , HOH A:500 , HOH A:530 , HOH A:590
BINDING SITE FOR RESIDUE SO4 A 4
05
AC5
SOFTWARE
ILE B:317 , GLY B:318 , CYS B:319 , ASN B:320 , LEU B:321 , ASP B:322 , GLN B:385 , SER B:393
BINDING SITE FOR RESIDUE GOL B 5
06
AC6
SOFTWARE
ILE A:317 , GLY A:318 , CYS A:319 , ASN A:320 , LEU A:321 , ASP A:322 , GLN A:349 , GLN A:385 , SER A:393 , HOH A:544
BINDING SITE FOR RESIDUE GOL A 6
07
AC7
SOFTWARE
SO4 A:4 , PRO A:278 , GLY A:281 , HIS A:282 , SER A:307 , THR A:367 , SER A:368 , GLN A:371 , LYS A:443 , HOH A:500
BINDING SITE FOR RESIDUE GOL A 7
08
AC8
SOFTWARE
SO4 B:3 , PRO B:278 , GLY B:281 , HIS B:282 , SER B:307 , THR B:367 , SER B:368 , GLN B:371 , LYS B:443 , HOH B:494
BINDING SITE FOR RESIDUE GOL B 8
09
AC9
SOFTWARE
LYS A:238 , ASP A:239 , LEU A:240 , SER A:241 , VAL A:333 , LEU A:334 , ARG A:375 , HOH A:529
BINDING SITE FOR RESIDUE GOL A 9
10
BC1
SOFTWARE
ASP A:225 , ILE A:228 , PHE A:229 , HOH A:552 , LEU B:321 , GLN B:324 , LEU B:392 , SER B:393
BINDING SITE FOR RESIDUE GOL A 10
11
BC2
SOFTWARE
TYR A:418 , VAL A:441 , ILE A:442 , LYS A:443 , THR A:444 , HOH A:517 , HOH A:540 , HOH A:606
BINDING SITE FOR RESIDUE GOL A 11
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(7, 14)
Info
All Exons
Exon 1.6 (A:182-204 | B:182-204)
Exon 1.8 (A:205-239 (gaps) | B:205-239 (gaps...)
Exon 1.9 (A:239-296 (gaps) | B:239-296 (gaps...)
Exon 1.10 (A:296-354 | B:296-354)
Exon 1.11 (A:354-375 | B:354-375)
Exon 1.13 (A:375-416 | B:375-416)
Exon 1.14 (A:417-471 (gaps) | B:417-471 (gaps...)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11
6: Boundary 1.11/1.13
7: Boundary 1.13/1.14
8: Boundary 1.14/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000396197
1
ENSE00001343027
chr11:
18610281-18610160
122
UEVLD_HUMAN
1-14
14
0
-
-
1.2
ENST00000396197
2
ENSE00001150754
chr11:
18600355-18600271
85
UEVLD_HUMAN
15-43
29
0
-
-
1.3
ENST00000396197
3
ENSE00001322441
chr11:
18596959-18596894
66
UEVLD_HUMAN
43-65
23
0
-
-
1.4
ENST00000396197
4
ENSE00001106792
chr11:
18591924-18591761
164
UEVLD_HUMAN
65-119
55
0
-
-
1.5
ENST00000396197
5
ENSE00001106800
chr11:
18588029-18587894
136
UEVLD_HUMAN
120-165
46
0
-
-
1.6
ENST00000396197
6
ENSE00000997735
chr11:
18586557-18586439
119
UEVLD_HUMAN
165-204
40
2
A:182-204
B:182-204
23
23
1.8
ENST00000396197
8
ENSE00000997734
chr11:
18579877-18579775
103
UEVLD_HUMAN
205-239
35
2
A:205-239 (gaps)
B:205-239 (gaps)
35
35
1.9
ENST00000396197
9
ENSE00000997739
chr11:
18568597-18568427
171
UEVLD_HUMAN
239-296
58
2
A:239-296 (gaps)
B:239-296 (gaps)
58
58
1.10
ENST00000396197
10
ENSE00000997736
chr11:
18566343-18566170
174
UEVLD_HUMAN
296-354
59
2
A:296-354
B:296-354
59
59
1.11
ENST00000396197
11
ENSE00001210262
chr11:
18558016-18557953
64
UEVLD_HUMAN
354-375
22
2
A:354-375
B:354-375
22
22
1.13
ENST00000396197
13
ENSE00001524205
chr11:
18556000-18555877
124
UEVLD_HUMAN
375-416
42
2
A:375-416
B:375-416
42
42
1.14
ENST00000396197
14
ENSE00001790365
chr11:
18554034-18553245
790
UEVLD_HUMAN
417-471
55
2
A:417-471 (gaps)
B:417-471 (gaps)
55
55
[
close EXON info
]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2i6ta2 (A:319-471)
1b: SCOP_d2i6tb2 (B:319-471)
2a: SCOP_d2i6ta1 (A:182-318)
2b: SCOP_d2i6tb1 (B:182-318)
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Classes
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)
(
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(
)
(
)
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(
)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
LDH C-terminal domain-like
(172)
Superfamily
:
LDH C-terminal domain-like
(172)
Family
:
automated matches
(38)
Protein domain
:
automated matches
(38)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2i6ta2
A:319-471
1b
d2i6tb2
B:319-471
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NAD(P)-binding Rossmann-fold domains
(1604)
Superfamily
:
NAD(P)-binding Rossmann-fold domains
(1604)
Family
:
automated matches
(447)
Protein domain
:
automated matches
(447)
Human (Homo sapiens) [TaxId: 9606]
(32)
2a
d2i6ta1
A:182-318
2b
d2i6tb1
B:182-318
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asym.Unit (101 KB)
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