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2I1Y
Asym. Unit
Info
Asym.Unit (109 KB)
Biol.Unit 1 (53 KB)
Biol.Unit 2 (54 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PHOSPHATASE DOMAIN OF HUMAN PTP IA-2
Authors
:
J. Faber-Barata, Y. Patskovsky, J. Alvarado, D. Smith, J. Koss, S. R. Wa S. Ozyurt, S. Atwell, A. Powell, M. C. Kearins, M. Maletic, I. Rooney, K M. Freeman, J. C. Russell, D. A. Thompson, S. K. Burley, S. C. Almo, New Research Center For Structural Genomics (Nysgxrc)
Date
:
15 Aug 06 (Deposition) - 29 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.23
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Receptor-Type Protein Tyrosine Phosphatase Precursor, Phosphatase, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. C. Almo, J. B. Bonanno, J. M. Sauder, S. Emtage, T. P. Dilorenzo, V. Malashkevich, S. R. Wasserman, S. Swaminathan, S. Eswaramoorthy, R. Agarwal, D. Kumaran, M. Madegowda, S. Ragumani, Y. Patskovsky, J. Alvarado, U. A. Ramagopal, J. Faber-Barata, M. R. Chance, A. Sali, A. Fiser, Z. Y. Zhang, D. S. Lawrence, S. K. Burley
Structural Genomics Of Protein Phosphatases
J. Struct. Funct. Genom. V. 8 121 2007
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LEU A:926 , MET A:929 , ALA A:930 , ILE A:973
BINDING SITE FOR RESIDUE GOL A 3288
2
AC2
SOFTWARE
LEU B:926 , MET B:929 , VAL B:970 , ILE B:973
BINDING SITE FOR RESIDUE GOL B 3287
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_PTP (A:709-969,B:709-969)
2: TYR_PHOSPHATASE_2 (A:888-960,B:888-960)
3: TYR_PHOSPHATASE_1 (A:907-917,B:907-917)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_PTP
PS50055
PTP type protein phosphatase family profile.
PTPRN_HUMAN
709-969
2
A:709-969
B:709-969
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
PTPRN_HUMAN
888-960
2
A:888-960
B:888-960
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
PTPRN_HUMAN
907-917
2
A:907-917
B:907-917
[
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Exons
(10, 20)
Info
All Exons
Exon 1.15b (A:691-696 | B:687-696)
Exon 1.16 (A:697-746 | B:697-746)
Exon 1.17a (A:746-770 | B:746-770)
Exon 1.18 (A:771-796 | B:771-796)
Exon 1.19a (A:797-836 | B:797-836)
Exon 1.19d (A:837-892 | B:837-892)
Exon 1.20b (A:892-910 | B:892-910)
Exon 1.21 (A:910-932 | B:910-932)
Exon 1.22 (A:932-956 | B:932-956)
Exon 1.23e (A:957-977 | B:957-976)
View:
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Label:
All Exon Boundaries
01: Boundary 1.14b/1.15b
02: Boundary 1.15b/1.16
03: Boundary 1.16/1.17a
04: Boundary 1.17a/1.18
05: Boundary 1.18/1.19a
06: Boundary 1.19a/1.19d
07: Boundary 1.19d/1.20b
08: Boundary 1.20b/1.21
09: Boundary 1.21/1.22
10: Boundary 1.22/1.23e
11: Boundary 1.23e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000295718
1b
ENSE00001843122
chr2:
220174295-220173940
356
PTPRN_HUMAN
1-39
39
0
-
-
1.4c
ENST00000295718
4c
ENSE00001609781
chr2:
220172564-220172514
51
PTPRN_HUMAN
39-56
18
0
-
-
1.4f
ENST00000295718
4f
ENSE00001646399
chr2:
220172279-220172166
114
PTPRN_HUMAN
56-94
39
0
-
-
1.6b
ENST00000295718
6b
ENSE00001689890
chr2:
220168553-220168457
97
PTPRN_HUMAN
94-126
33
0
-
-
1.7e
ENST00000295718
7e
ENSE00001669026
chr2:
220167559-220167298
262
PTPRN_HUMAN
126-213
88
0
-
-
1.8c
ENST00000295718
8c
ENSE00001779946
chr2:
220167213-220166859
355
PTPRN_HUMAN
214-332
119
0
-
-
1.9
ENST00000295718
9
ENSE00001803105
chr2:
220166441-220166310
132
PTPRN_HUMAN
332-376
45
0
-
-
1.10
ENST00000295718
10
ENSE00001680212
chr2:
220165699-220165665
35
PTPRN_HUMAN
376-387
12
0
-
-
1.11
ENST00000295718
11
ENSE00001790646
chr2:
220164981-220164707
275
PTPRN_HUMAN
388-479
92
0
-
-
1.12
ENST00000295718
12
ENSE00001792556
chr2:
220164508-220164422
87
PTPRN_HUMAN
479-508
30
0
-
-
1.13c
ENST00000295718
13c
ENSE00001663640
chr2:
220164106-220164027
80
PTPRN_HUMAN
508-535
28
0
-
-
1.13d
ENST00000295718
13d
ENSE00001722334
chr2:
220163833-220163769
65
PTPRN_HUMAN
535-556
22
0
-
-
1.14b
ENST00000295718
14b
ENSE00001641294
chr2:
220162825-220162607
219
PTPRN_HUMAN
557-629
73
0
-
-
1.15b
ENST00000295718
15b
ENSE00001804219
chr2:
220162155-220161955
201
PTPRN_HUMAN
630-696
67
2
A:691-696
B:687-696
6
10
1.16
ENST00000295718
16
ENSE00001596701
chr2:
220161854-220161707
148
PTPRN_HUMAN
697-746
50
2
A:697-746
B:697-746
50
50
1.17a
ENST00000295718
17a
ENSE00001787617
chr2:
220161544-220161471
74
PTPRN_HUMAN
746-770
25
2
A:746-770
B:746-770
25
25
1.18
ENST00000295718
18
ENSE00001642327
chr2:
220161238-220161161
78
PTPRN_HUMAN
771-796
26
2
A:771-796
B:771-796
26
26
1.19a
ENST00000295718
19a
ENSE00001671885
chr2:
220161067-220160948
120
PTPRN_HUMAN
797-836
40
2
A:797-836
B:797-836
40
40
1.19d
ENST00000295718
19d
ENSE00001770552
chr2:
220159863-220159697
167
PTPRN_HUMAN
837-892
56
2
A:837-892
B:837-892
56
56
1.20b
ENST00000295718
20b
ENSE00001650195
chr2:
220156245-220156192
54
PTPRN_HUMAN
892-910
19
2
A:892-910
B:892-910
19
19
1.21
ENST00000295718
21
ENSE00001687150
chr2:
220155612-220155548
65
PTPRN_HUMAN
910-932
23
2
A:910-932
B:910-932
23
23
1.22
ENST00000295718
22
ENSE00001766807
chr2:
220155333-220155260
74
PTPRN_HUMAN
932-956
25
2
A:932-956
B:932-956
25
25
1.23e
ENST00000295718
23e
ENSE00001775602
chr2:
220155019-220154345
675
PTPRN_HUMAN
957-979
23
2
A:957-977
B:957-976
21
20
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2i1ya_ (A:)
1b: SCOP_d2i1yb_ (B:)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d2i1ya_
A:
1b
d2i1yb_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2i1yA00 (A:691-977)
1b: CATH_2i1yB00 (B:687-976)
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Organisms
(
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(
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Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Protein-Tyrosine Phosphatase; Chain A
(262)
Homologous Superfamily
:
Protein tyrosine phosphatase superfamily
(228)
Human (Homo sapiens)
(196)
1a
2i1yA00
A:691-977
1b
2i1yB00
B:687-976
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Pfam Domains
(0, 0)
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