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Getting 'Biological Unit' information from database.
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Getting 'Exon' information from database.
2HV1
Asym. Unit
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Asym.Unit (548 KB)
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Models
(8 )
Title
:
HADDOCK STRUCTURE OF ARNT PAS-B HOMODIMER
Authors
:
P. B. Card, K. H. Gardner
Date
:
27 Jul 06 (Deposition) - 07 Aug 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (8 x)
Keywords
:
Arnt Transcription Pas Haddock, Transcription, Protein Binding
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. B. Card, K. H. Gardner
Practical Aspects Of Using Paramagnetic Relaxation Enhancements For Protein Docking: Application To The Arnt Pas-B Homodimer
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_024280 (R79Q, chain A/B, )
2: VAR_049537 (E84K, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_024280
R
430
Q
ARNT_HUMAN
Polymorphism
2229175
A/B
R
79
Q
2
UniProt
VAR_049537
E
435
K
ARNT_HUMAN
Polymorphism
2229176
A/B
E
84
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PAS (-|A:17-68,B:17-68)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAS
PS50112
PAS repeat profile.
ARNT_HUMAN
161-235
368-419
2
-
A:17-68
B:17-68
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Exons
(4, 8)
Info
All Exons
Exon 1.15b (A:7-38 | B:7-38)
Exon 1.16 (A:39-63 | B:39-63)
Exon 1.17 (A:64-114 | B:64-114)
Exon 1.18b (A:114-114 | B:114-114)
View:
Select:
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All Exon Boundaries
1: Boundary 1.13d/1.15b
2: Boundary 1.15b/1.16
3: Boundary 1.16/1.17
4: Boundary 1.17/1.18b
5: Boundary 1.18b/1.19c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000358595
1a
ENSE00002062254
chr1:
150849244-150849019
226
ARNT_HUMAN
1-9
9
0
-
-
1.3
ENST00000358595
3
ENSE00001717520
chr1:
150830936-150830825
112
ARNT_HUMAN
9-46
38
0
-
-
1.5b
ENST00000358595
5b
ENSE00001071957
chr1:
150825282-150825238
45
ARNT_HUMAN
46-61
16
0
-
-
1.6
ENST00000358595
6
ENSE00000960027
chr1:
150818783-150818739
45
ARNT_HUMAN
61-76
16
0
-
-
1.7
ENST00000358595
7
ENSE00001263986
chr1:
150814944-150814900
45
ARNT_HUMAN
76-91
16
0
-
-
1.8b
ENST00000358595
8b
ENSE00000960029
chr1:
150812130-150811917
214
ARNT_HUMAN
91-162
72
0
-
-
1.9c
ENST00000358595
9c
ENSE00000960030
chr1:
150808969-150808756
214
ARNT_HUMAN
163-234
72
0
-
-
1.10b
ENST00000358595
10b
ENSE00000960031
chr1:
150807116-150807014
103
ARNT_HUMAN
234-268
35
0
-
-
1.11
ENST00000358595
11
ENSE00000960032
chr1:
150804875-150804810
66
ARNT_HUMAN
268-290
23
0
-
-
1.12a
ENST00000358595
12a
ENSE00000960033
chr1:
150804379-150804294
86
ARNT_HUMAN
290-319
30
0
-
-
1.13d
ENST00000358595
13d
ENSE00001417988
chr1:
150802456-150802380
77
ARNT_HUMAN
319-344
26
0
-
-
1.15b
ENST00000358595
15b
ENSE00001414390
chr1:
150801703-150801569
135
ARNT_HUMAN
345-389
45
2
A:7-38
B:7-38
32
32
1.16
ENST00000358595
16
ENSE00001186051
chr1:
150799093-150799019
75
ARNT_HUMAN
390-414
25
2
A:39-63
B:39-63
25
25
1.17
ENST00000358595
17
ENSE00001804030
chr1:
150795821-150795670
152
ARNT_HUMAN
415-465
51
2
A:64-114
B:64-114
51
51
1.18b
ENST00000358595
18b
ENSE00001044530
chr1:
150790506-150790396
111
ARNT_HUMAN
465-502
38
2
A:114-114
B:114-114
1
1
1.19c
ENST00000358595
19c
ENSE00001044549
chr1:
150789909-150789837
73
ARNT_HUMAN
502-526
25
0
-
-
1.20
ENST00000358595
20
ENSE00001044525
chr1:
150789678-150789558
121
ARNT_HUMAN
527-567
41
0
-
-
1.21
ENST00000358595
21
ENSE00001044520
chr1:
150789366-150789264
103
ARNT_HUMAN
567-601
35
0
-
-
1.22a
ENST00000358595
22a
ENSE00001044548
chr1:
150788882-150788735
148
ARNT_HUMAN
601-650
50
0
-
-
1.23a
ENST00000358595
23a
ENSE00001151505
chr1:
150786715-150786553
163
ARNT_HUMAN
651-705
55
0
-
-
1.24a
ENST00000358595
24a
ENSE00001371736
chr1:
150785814-150785648
167
ARNT_HUMAN
705-760
56
0
-
-
1.25f
ENST00000358595
25f
ENSE00001855735
chr1:
150784586-150782181
2406
ARNT_HUMAN
761-789
29
0
-
-
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2hv1a_ (A:)
1b: SCOP_d2hv1b_ (B:)
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)
Protein Domains
(
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Profilin-like
(304)
Superfamily
:
PYP-like sensor domain (PAS domain)
(163)
Family
:
automated matches
(33)
Protein domain
:
automated matches
(33)
Human (Homo sapiens) [TaxId: 9606]
(15)
1a
d2hv1a_
A:
1b
d2hv1b_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(0, 0)
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all PFAM domains
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Atom Selection
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Protein
Nucleic
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (548 KB)
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