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Getting 'Exon' information from database.
2HRA
Asym. Unit
Info
Asym.Unit (68 KB)
Biol.Unit 1 (33 KB)
Biol.Unit 2 (32 KB)
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(1)
Title
:
CRYSTAL STRUCTURES OF THE INTERACTING DOMAINS FROM YEAST GLUTAMYL-TRNA SYNTHETASE AND TRNA AMINOACYLATION AND NUCLEAR EXPORT COFACTOR ARC1P REVEAL A NOVEL FUNCTION FOR AN OLD FOLD
Authors
:
H. Simader, M. Hothorn, D. Suck
Date
:
20 Jul 06 (Deposition) - 05 Sep 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Gst-Fold, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Simader, M. Hothorn, D. Suck
Structures Of The Interacting Domains From Yeast Glutamyl-Trna Synthetase And Trna-Aminoacylation And Nuclear-Export Cofactor Arc1P Reveal A Novel Function For A Old Fold.
Acta Crystallogr. , Sect. D V. 62 1510 2006
(for further references see the
PDB file header
)
[
close entry info
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Hetero Components
(1, 44)
Info
All Hetero Components
1a: IODIDE ION (IODa)
1aa: IODIDE ION (IODaa)
1ab: IODIDE ION (IODab)
1ac: IODIDE ION (IODac)
1ad: IODIDE ION (IODad)
1ae: IODIDE ION (IODae)
1af: IODIDE ION (IODaf)
1ag: IODIDE ION (IODag)
1ah: IODIDE ION (IODah)
1ai: IODIDE ION (IODai)
1aj: IODIDE ION (IODaj)
1ak: IODIDE ION (IODak)
1al: IODIDE ION (IODal)
1am: IODIDE ION (IODam)
1an: IODIDE ION (IODan)
1ao: IODIDE ION (IODao)
1ap: IODIDE ION (IODap)
1aq: IODIDE ION (IODaq)
1ar: IODIDE ION (IODar)
1b: IODIDE ION (IODb)
1c: IODIDE ION (IODc)
1d: IODIDE ION (IODd)
1e: IODIDE ION (IODe)
1f: IODIDE ION (IODf)
1g: IODIDE ION (IODg)
1h: IODIDE ION (IODh)
1i: IODIDE ION (IODi)
1j: IODIDE ION (IODj)
1k: IODIDE ION (IODk)
1l: IODIDE ION (IODl)
1m: IODIDE ION (IODm)
1n: IODIDE ION (IODn)
1o: IODIDE ION (IODo)
1p: IODIDE ION (IODp)
1q: IODIDE ION (IODq)
1r: IODIDE ION (IODr)
1s: IODIDE ION (IODs)
1t: IODIDE ION (IODt)
1u: IODIDE ION (IODu)
1v: IODIDE ION (IODv)
1w: IODIDE ION (IODw)
1x: IODIDE ION (IODx)
1y: IODIDE ION (IODy)
1z: IODIDE ION (IODz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IOD
44
Ligand/Ion
IODIDE ION
[
close Hetero Component info
]
Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
PHE A:109
BINDING SITE FOR RESIDUE IOD A 402
02
AC2
SOFTWARE
PHE A:85 , ASN A:87 , ALA A:137
BINDING SITE FOR RESIDUE IOD A 406
03
AC3
SOFTWARE
PHE B:85 , ALA B:137 , IOD B:421
BINDING SITE FOR RESIDUE IOD B 407
04
AC4
SOFTWARE
GLU A:117 , LYS B:76
BINDING SITE FOR RESIDUE IOD A 408
05
AC5
SOFTWARE
LEU B:133
BINDING SITE FOR RESIDUE IOD B 410
06
AC6
SOFTWARE
SER A:154 , ASN A:158
BINDING SITE FOR RESIDUE IOD A 412
07
AC7
SOFTWARE
LYS A:59
BINDING SITE FOR RESIDUE IOD A 413
08
AC8
SOFTWARE
ASN B:108 , HOH B:478
BINDING SITE FOR RESIDUE IOD B 414
09
AC9
SOFTWARE
ASN A:108 , ILE B:31
BINDING SITE FOR RESIDUE IOD B 415
10
BC1
SOFTWARE
THR A:70 , GLU A:71 , HOH A:554
BINDING SITE FOR RESIDUE IOD A 416
11
BC2
SOFTWARE
ASN B:49
BINDING SITE FOR RESIDUE IOD B 417
12
BC3
SOFTWARE
ASN A:44 , GLY A:198 , HOH A:483 , HOH A:563
BINDING SITE FOR RESIDUE IOD A 418
13
BC4
SOFTWARE
ASP A:72 , LYS B:111 , GLN B:114
BINDING SITE FOR RESIDUE IOD B 419
14
BC5
SOFTWARE
IOD B:423
BINDING SITE FOR RESIDUE IOD B 420
15
BC6
SOFTWARE
PHE B:85 , LYS B:90 , IOD B:407 , HOH B:541
BINDING SITE FOR RESIDUE IOD B 421
16
BC7
SOFTWARE
VAL B:32 , SER B:148
BINDING SITE FOR RESIDUE IOD B 422
17
BC8
SOFTWARE
IOD B:420
BINDING SITE FOR RESIDUE IOD B 423
18
BC9
SOFTWARE
LYS A:111 , ASP B:72
BINDING SITE FOR RESIDUE IOD A 424
19
CC1
SOFTWARE
ASN B:44 , HOH B:524
BINDING SITE FOR RESIDUE IOD B 426
20
CC2
SOFTWARE
ASN A:49
BINDING SITE FOR RESIDUE IOD A 428
21
CC3
SOFTWARE
ARG A:147 , HIS A:181
BINDING SITE FOR RESIDUE IOD A 430
22
CC4
SOFTWARE
THR A:127
BINDING SITE FOR RESIDUE IOD A 431
23
CC5
SOFTWARE
GLU B:103 , HOH B:477
BINDING SITE FOR RESIDUE IOD B 432
24
CC6
SOFTWARE
ASN A:108 , HOH B:476 , HOH B:495
BINDING SITE FOR RESIDUE IOD A 433
25
CC7
SOFTWARE
ASP A:89
BINDING SITE FOR RESIDUE IOD A 436
26
CC8
SOFTWARE
ASP B:57
BINDING SITE FOR RESIDUE IOD B 438
27
CC9
SOFTWARE
HOH B:451
BINDING SITE FOR RESIDUE IOD B 439
28
DC1
SOFTWARE
LEU A:133 , ALA B:83 , HOH B:518
BINDING SITE FOR RESIDUE IOD B 440
29
DC2
SOFTWARE
MET B:173
BINDING SITE FOR RESIDUE IOD B 441
30
DC3
SOFTWARE
HOH B:510
BINDING SITE FOR RESIDUE IOD B 444
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:19-198 | B:19-193)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YGL245W
1
YGL245W.1
VII:39023-41149
2127
SYEC_YEAST
1-708
708
2
A:19-198
B:19-193
180
175
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
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Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
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Show PDB file:
Asym.Unit (68 KB)
Header - Asym.Unit
Biol.Unit 1 (33 KB)
Header - Biol.Unit 1
Biol.Unit 2 (32 KB)
Header - Biol.Unit 2
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