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2HLE
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (53 KB)
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(1)
Title
:
STRUCTURAL AND BIOPHYSICAL CHARACTERIZATION OF THE EPHB4-EPHRINB2 PROTEIN PROTEIN INTERACTION AND RECEPTOR SPECIFICITY.
Authors
:
J. E. Chrencik, A. Brooun, P. Kuhn, Accelerated Technologies Center To 3D Structure (Atcg3D)
Date
:
06 Jul 06 (Deposition) - 22 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Protein-Protein Interaction, Receptor Tryosine Kinase, Bi-Directional Cell Signaling, Transferase-Transferase Receptor Complex, Structural Genomics, Psi-2, Protein Structure Initiative, Accelerated Technologies Center For Gene To 3D Structure, Atcg3D
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. E. Chrencik, A. Brooun, M. L. Kraus, M. I. Recht, A. R. Kolatkar, G. W. Han, J. M. Seifert, H. Widmer, M. Auer, P. Kuhn
Structural And Biophysical Characterization Of The Ephb4-Ephrinb2 Protein-Protein Interaction And Receptor Specificity.
J. Biol. Chem. V. 281 28185 2006
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(3, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042181 (P67L, chain A, )
2: VAR_042182 (V113I, chain A, )
3: VAR_071163 (K162R, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042181
P
67
L
EPHB4_HUMAN
Polymorphism
34653459
A
P
67
L
2
UniProt
VAR_042182
V
113
I
EPHB4_HUMAN
Polymorphism
55866373
A
V
113
I
3
UniProt
VAR_071163
K
162
R
EPHB4_HUMAN
Polymorphism
17854760
A
K
162
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: EPH_LBD (A:17-196)
2: EPHRIN_RBD_2 (B:31-167)
3: EPHRIN_RBD_1 (B:112-139)
4: RECEPTOR_TYR_KIN_V_1 (A:178-196)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EPH_LBD
PS51550
Eph receptor ligand-binding domain profile.
EPHB4_HUMAN
17-202
1
A:17-196
2
EPHRIN_RBD_2
PS51551
Ephrin receptor-binding (ephrin RBD) domain profile.
EFNB2_HUMAN
28-164
1
B:31-167
3
EPHRIN_RBD_1
PS01299
Ephrin receptor-binding (ephrin RBD) domain signature.
EFNB2_HUMAN
109-136
1
B:112-139
4
RECEPTOR_TYR_KIN_V_1
PS00790
Receptor tyrosine kinase class V signature 1.
EPHB4_HUMAN
178-198
1
A:178-196
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Exons
(7, 7)
Info
All Exons
Exon 1.1a (B:31-44)
Exon 1.2 (B:44-139 (gaps))
Exon 1.3 (B:139-168)
Exon 2.1b (A:9-18)
Exon 2.2b (A:18-41)
Exon 2.3 (A:42-137)
Exon 2.4 (A:138-196)
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All Exon Boundaries
1: Boundary -/1.1a
2: Boundary 1.1a/1.2
3: Boundary 1.2/1.3
4: Boundary 1.3/1.4
5: Boundary -/2.1b
6: Boundary 2.1b/2.2b
7: Boundary 2.2b/2.3
8: Boundary 2.3/2.4
9: Boundary 2.4/2.5b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000245323
1a
ENSE00001931658
chr13:
107187462-107187191
272
EFNB2_HUMAN
1-41
41
1
B:31-44
14
1.2
ENST00000245323
2
ENSE00001654984
chr13:
107165160-107164877
284
EFNB2_HUMAN
41-136
96
1
B:44-139 (gaps)
96
1.3
ENST00000245323
3
ENSE00000995278
chr13:
107148188-107148096
93
EFNB2_HUMAN
136-167
32
1
B:139-168
30
1.4
ENST00000245323
4
ENSE00000854052
chr13:
107147342-107147229
114
EFNB2_HUMAN
167-205
39
0
-
-
1.5b
ENST00000245323
5b
ENSE00001923391
chr13:
107145776-107142093
3684
EFNB2_HUMAN
205-333
129
0
-
-
2.1b
ENST00000358173
1b
ENSE00001868923
chr7:
100425121-100424601
521
EPHB4_HUMAN
1-18
18
1
A:9-18
10
2.2b
ENST00000358173
2b
ENSE00000825052
chr7:
100421895-100421825
71
EPHB4_HUMAN
18-41
24
1
A:18-41
24
2.3
ENST00000358173
3
ENSE00000825051
chr7:
100421553-100421266
288
EPHB4_HUMAN
42-137
96
1
A:42-137
96
2.4
ENST00000358173
4
ENSE00000825050
chr7:
100420289-100419893
397
EPHB4_HUMAN
138-270
133
1
A:138-196
59
2.5b
ENST00000358173
5b
ENSE00000825049
chr7:
100417918-100417763
156
EPHB4_HUMAN
270-322
53
0
-
-
2.6
ENST00000358173
6
ENSE00000825048
chr7:
100417511-100417179
333
EPHB4_HUMAN
322-433
112
0
-
-
2.7b
ENST00000358173
7b
ENSE00000710240
chr7:
100416266-100416142
125
EPHB4_HUMAN
433-474
42
0
-
-
2.8c
ENST00000358173
8c
ENSE00001706820
chr7:
100414979-100414814
166
EPHB4_HUMAN
475-530
56
0
-
-
2.9c
ENST00000358173
9c
ENSE00001665919
chr7:
100411643-100411541
103
EPHB4_HUMAN
530-564
35
0
-
-
2.10
ENST00000358173
10
ENSE00001787983
chr7:
100411338-100411274
65
EPHB4_HUMAN
564-586
23
0
-
-
2.11b
ENST00000358173
11b
ENSE00001754468
chr7:
100410830-100410717
114
EPHB4_HUMAN
586-624
39
0
-
-
2.12
ENST00000358173
12
ENSE00001631272
chr7:
100410616-100410369
248
EPHB4_HUMAN
624-706
83
0
-
-
2.13a
ENST00000358173
13a
ENSE00001753966
chr7:
100405202-100404987
216
EPHB4_HUMAN
707-778
72
0
-
-
2.14a
ENST00000358173
14a
ENSE00001623534
chr7:
100404191-100404042
150
EPHB4_HUMAN
779-828
50
0
-
-
2.15
ENST00000358173
15
ENSE00001783205
chr7:
100403316-100403123
194
EPHB4_HUMAN
829-893
65
0
-
-
2.16
ENST00000358173
16
ENSE00001649970
chr7:
100402943-100402788
156
EPHB4_HUMAN
893-945
53
0
-
-
2.17b
ENST00000358173
17b
ENSE00001639386
chr7:
100401212-100400187
1026
EPHB4_HUMAN
945-987
43
0
-
-
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SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2hleb_ (B:)
2a: SCOP_d2hlea1 (A:17-196)
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Protein Domains
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(
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Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Ephrin ectodomain
(11)
Protein domain
:
Ephrin-b2 ectodomain
(4)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2hleb_
B:
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Ephrin receptor ligand binding domain
(15)
Protein domain
:
Ephrin type-B receptor 4
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d2hlea1
A:17-196
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2hleB00 (B:31-168)
2a: CATH_2hleA00 (A:9-196)
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Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Human (Homo sapiens)
(5)
1a
2hleB00
B:31-168
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Human (Homo sapiens)
(39)
2a
2hleA00
A:9-196
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Pfam Domains
(0, 0)
Info
all PFAM domains
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