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2HKJ
Asym. Unit
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Asym.Unit (88 KB)
Biol.Unit 1 (82 KB)
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(1)
Title
:
TOPOISOMERASE VI-B BOUND TO RADICICOL
Authors
:
K. D. Corbett, J. M. Berger
Date
:
04 Jul 06 (Deposition) - 29 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Topoisomerase, Ghkl, Drug Complex, Radicicol, Isomerase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. D. Corbett, J. M. Berger
Structural Basis For Topoisomerase Vi Inhibition By The Anti-Hsp90 Drug Radicicol
Nucleic Acids Res. V. 34 4269 2006
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
2a: MAGNESIUM ION (MGa)
3a: RADICICOL (RDCa)
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Label:
No.
Name
Count
Type
Full Name
1
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
2
MG
1
Ligand/Ion
MAGNESIUM ION
3
RDC
1
Ligand/Ion
RADICICOL
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:105 , GLY A:106 , HOH A:502 , HOH A:553 , HOH A:582 , HOH A:658 , HOH A:688
BINDING SITE FOR RESIDUE MG A 471
2
AC2
SOFTWARE
PRO A:309 , ALA A:344 , TYR A:345 , GLN A:346 , GLY A:347 , HIS A:348
BINDING SITE FOR RESIDUE DMS A 472
3
AC3
SOFTWARE
LEU A:39 , ASN A:42 , ASP A:45 , ALA A:46 , ASP A:76 , GLY A:80 , ILE A:81 , ALA A:89 , PHE A:90 , VAL A:112 , THR A:170 , VAL A:172 , HOH A:506 , HOH A:508 , HOH A:560 , HOH A:578
BINDING SITE FOR RESIDUE RDC A 501
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2hkja1 (A:229-306)
2a: SCOP_d2hkja3 (A:10-228)
3a: SCOP_d2hkja2 (A:307-470)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
S13-like H2TH domain
(119)
Superfamily
:
S13-like H2TH domain
(119)
Family
:
Topoisomerase VI-B subunit middle domain
(7)
Protein domain
:
Topoisomerase VI-B subunit middle domain
(7)
Sulfolobus shibatae [TaxId: 2286]
(7)
1a
d2hkja1
A:229-306
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Superfamily
:
ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
(364)
Family
:
DNA gyrase/MutL, N-terminal domain
(28)
Protein domain
:
Topoisomerase VI-B subunit
(7)
Sulfolobus shibatae [TaxId: 2286]
(7)
2a
d2hkja3
A:10-228
Fold
:
Ribosomal protein S5 domain 2-like
(306)
Superfamily
:
Ribosomal protein S5 domain 2-like
(306)
Family
:
DNA gyrase/MutL, second domain
(21)
Protein domain
:
Topoisomerase VI-B subunit
(7)
Sulfolobus shibatae [TaxId: 2286]
(7)
3a
d2hkja2
A:307-470
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2hkjA01 (A:10-220)
2a: CATH_2hkjA03 (A:315-470)
3a: CATH_2hkjA02 (A:230-307)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Heat Shock Protein 90
(209)
Homologous Superfamily
:
[code=3.30.565.10, no name defined]
(205)
Sulfolobus shibatae. Organism_taxid: 2286.
(7)
1a
2hkjA01
A:10-220
Topology
:
Ribosomal Protein S5; domain 2
(189)
Homologous Superfamily
:
[code=3.30.230.10, no name defined]
(170)
Sulfolobus shibatae. Organism_taxid: 2286.
(7)
2a
2hkjA03
A:315-470
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
[code=1.10.8.50, no name defined]
(26)
Sulfolobus shibatae. Organism_taxid: 2286.
(7)
3a
2hkjA02
A:230-307
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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Asym.Unit (88 KB)
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