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Getting 'Biological Unit' information from database.
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2HGS
Biol. Unit 1
Info
Asym.Unit (86 KB)
Biol.Unit 1 (161 KB)
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(1)
Title
:
HUMAN GLUTATHIONE SYNTHETASE
Authors
:
G. Polekhina, P. Board, J. Rossjohn, M. W. Parker
Date
:
04 Jan 99 (Deposition) - 22 Jun 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Amine/Carboxylate Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Polekhina, P. G. Board, R. R. Gali, J. Rossjohn, M. W. Parker
Molecular Basis Of Glutathione Synthetase Deficiency And A Rare Gene Permutation Event.
Embo J. V. 18 3204 1999
(for further references see the
PDB file header
)
[
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Hetero Components
(3, 8)
Info
All Hetero Components
1a: ADENOSINE-5'-DIPHOSPHATE (ADPa)
2a: GLUTATHIONE (GSHa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ADP
2
Ligand/Ion
ADENOSINE-5'-DIPHOSPHATE
2
GSH
2
Ligand/Ion
GLUTATHIONE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
SO4
4
Ligand/Ion
SULFATE ION
[
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]
Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:144 , ASN A:146 , GLU A:368 , ADP A:500 , MG A:502 , SO4 A:505
BINDING SITE FOR RESIDUE MG A 501
2
AC2
SOFTWARE
GLU A:144 , ADP A:500 , MG A:501 , SO4 A:505 , HOH A:622 , HOH A:735
BINDING SITE FOR RESIDUE MG A 502
3
AC3
SOFTWARE
LYS A:384 , LEU A:410 , ARG A:412 , ARG A:418 , ALA A:453 , HIS A:456 , HOH A:512 , HOH A:552 , HOH A:640 , HOH A:642
BINDING SITE FOR RESIDUE SO4 A 504
4
AC4
SOFTWARE
ARG A:125 , GLU A:144 , ASN A:146 , GLU A:368 , GLY A:369 , ARG A:450 , ADP A:500 , MG A:501 , MG A:502 , GSH A:503 , HOH A:622 , HOH A:623
BINDING SITE FOR RESIDUE SO4 A 505
5
AC5
SOFTWARE
ILE A:143 , GLU A:144 , LYS A:305 , LYS A:364 , GLU A:368 , GLY A:369 , GLY A:370 , ASN A:373 , TYR A:375 , MET A:398 , GLU A:399 , LYS A:400 , ILE A:401 , GLU A:425 , LYS A:452 , ALA A:457 , ASP A:458 , GLY A:459 , MG A:501 , MG A:502 , SO4 A:505 , HOH A:510 , HOH A:528 , HOH A:621 , HOH A:622 , HOH A:623 , HOH A:625
BINDING SITE FOR RESIDUE ADP A 500
6
AC6
SOFTWARE
ARG A:125 , ILE A:148 , SER A:149 , ALA A:150 , SER A:151 , PHE A:152 , GLU A:214 , ASN A:216 , GLN A:220 , ARG A:267 , TYR A:270 , ARG A:450 , GLY A:460 , VAL A:461 , ALA A:462 , SO4 A:505 , HOH A:520 , HOH A:557
BINDING SITE FOR RESIDUE GSH A 503
[
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SAPs(SNPs)/Variants
(15, 30)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
01: VAR_003602 (A26D, chain A, )
02: VAR_003603 (L188P, chain A, )
03: VAR_003604 (D219A, chain A, )
04: VAR_003605 (D219G, chain A, )
05: VAR_025047 (R236Q, chain A, )
06: VAR_003606 (L254R, chain A, )
07: VAR_003607 (R267W, chain A, )
08: VAR_003608 (Y270C, chain A, )
09: VAR_003609 (Y270H, chain A, )
10: VAR_003610 (R283C, chain A, )
11: VAR_003611 (L286Q, chain A, )
12: VAR_003612 (R330C, chain A, )
13: VAR_025048 (K437E, chain A, )
14: VAR_003613 (G464V, chain A, )
15: VAR_003614 (D469E, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_003602
A
26
D
GSHB_HUMAN
Disease (GSS deficiency)
---
A
A
26
D
02
UniProt
VAR_003603
L
188
P
GSHB_HUMAN
Disease (GSS deficiency)
---
A
L
188
P
03
UniProt
VAR_003604
D
219
A
GSHB_HUMAN
Disease (GSS deficiency)
---
A
D
219
A
04
UniProt
VAR_003605
D
219
G
GSHB_HUMAN
Disease (GSS deficiency)
28938472
A
D
219
G
05
UniProt
VAR_025047
R
236
Q
GSHB_HUMAN
Polymorphism
34239729
A
R
236
Q
06
UniProt
VAR_003606
L
254
R
GSHB_HUMAN
Disease (GSS deficiency)
---
A
L
254
R
07
UniProt
VAR_003607
R
267
W
GSHB_HUMAN
Disease (GSS deficiency)
---
A
R
267
W
08
UniProt
VAR_003608
Y
270
C
GSHB_HUMAN
Disease (GSS deficiency)
---
A
Y
270
C
09
UniProt
VAR_003609
Y
270
H
GSHB_HUMAN
Disease (GSS deficiency)
---
A
Y
270
H
10
UniProt
VAR_003610
R
283
C
GSHB_HUMAN
Disease (GSS deficiency)
---
A
R
283
C
11
UniProt
VAR_003611
L
286
Q
GSHB_HUMAN
Disease (GSS deficiency)
---
A
L
286
Q
12
UniProt
VAR_003612
R
330
C
GSHB_HUMAN
Disease (GSS deficiency)
148640446
A
R
330
C
13
UniProt
VAR_025048
K
437
E
GSHB_HUMAN
Polymorphism
34852238
A
K
437
E
14
UniProt
VAR_003613
G
464
V
GSHB_HUMAN
Disease (GSS deficiency)
---
A
G
464
V
15
UniProt
VAR_003614
D
469
E
GSHB_HUMAN
Disease (GSS deficiency)
---
A
D
469
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2hgsa4 (A:3-201,A:304-474)
2a: SCOP_d2hgsa1 (A:202-303)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
ATP-grasp
(191)
Superfamily
:
Glutathione synthetase ATP-binding domain-like
(158)
Family
:
Eukaryotic glutathione synthetase ATP-binding domain
(3)
Protein domain
:
Eukaryotic glutathione synthetase ATP-binding domain
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2hgsa4
A:3-201,A:304-474
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
PreATP-grasp domain
(131)
Superfamily
:
PreATP-grasp domain
(131)
Family
:
Eukaryotic glutathione synthetase, substrate-binding domain
(3)
Protein domain
:
Eukaryotic glutathione synthetase, substrate-binding domain
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d2hgsa1
A:202-303
[
close SCOP info
]
CATH Domains
(5, 5)
Info
all CATH domains
1a: CATH_2hgsA02 (A:56-67,A:115-157,A:418-473)
2a: CATH_2hgsA05 (A:338-405)
3a: CATH_2hgsA01 (A:3-55,A:158-179,A:406-417)
4a: CATH_2hgsA04 (A:182-303)
5a: CATH_2hgsA03 (A:68-114,A:304-337)
View:
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(
)
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
D-amino Acid Aminotransferase; Chain A, domain 1
(175)
Homologous Superfamily
:
ATP-grasp fold, B domain
(118)
Human (Homo sapiens)
(3)
1a
2hgsA02
A:56-67,A:115-157,A:418-473
Topology
:
Dna Ligase; domain 1
(375)
Homologous Superfamily
:
[code=3.30.1490.50, no name defined]
(4)
Human (Homo sapiens)
(1)
2a
2hgsA05
A:338-405
Homologous Superfamily
:
[code=3.30.1490.80, no name defined]
(3)
Human (Homo sapiens)
(1)
3a
2hgsA01
A:3-55,A:158-179,A:406-417
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1760, no name defined]
(6)
Human (Homo sapiens)
(1)
4a
2hgsA04
A:182-303
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Glutathione Synthetase; Chain A, domain 3
(6)
Homologous Superfamily
:
Glutathione Synthetase; Chain A, domain 3
(6)
Human (Homo sapiens)
(1)
5a
2hgsA03
A:68-114,A:304-337
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
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Label:
Sorry, no Info available
[
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Atom Selection
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Chain A
Asymmetric Unit 1
Asymmetric Unit 2
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