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Getting 'Biological Unit' information from database.
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Getting 'Hetero Component' information from database.
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Getting 'Site' information from database.
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Getting 'PROSITE' information from database.
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Getting 'Exon' information from database.
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Asym. Unit
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Asym.Unit (52 KB)
Biol.Unit 1 (132 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN OX40L AND OX40
Authors
:
S. G. Hymowitz, D. M. Compaan
Date
:
22 Jun 06 (Deposition) - 29 Aug 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.41
Chains
:
Asym. Unit : F,R
Biol. Unit 1: F,R (3x)
Keywords
:
Cytokine, Receptor-Ligand Complex, Tnfsf, Tnfrsf
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. M. Compaan, S. G. Hymowitz
The Crystal Structure Of The Costimulatory Ox40-Ox40L Complex.
Structure V. 14 1321 2006
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER F:116 , TYR F:150 , ASN F:152
BINDING SITE FOR RESIDUE NAG F 200
2
AC2
SOFTWARE
ALA R:111 , ASN R:160
BINDING SITE FOR RESIDUE NAG R 200
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_070942 (R65C, chain R, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_070942
R
65
C
TNR4_HUMAN
Disease (IMD16)
---
R
R
65
C
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 5)
Info
All PROSITE Patterns/Profiles
1: TNFR_NGFR_2 (R:30-64|R:66-107)
2: TNFR_NGFR_1 (R:31-64|R:64-107)
3: TNF_1 (F:93-109)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TNFR_NGFR_2
PS50050
TNFR/NGFR family cysteine-rich region domain profile.
TNR4_HUMAN
30-64
66-107
2
R:30-64
R:66-107
2
TNFR_NGFR_1
PS00652
TNFR/NGFR family cysteine-rich region signature.
TNR4_HUMAN
31-64
64-107
2
R:31-64
R:64-107
3
TNF_1
PS00251
TNF family signature.
TNFL4_HUMAN
93-109
1
F:93-109
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Exons
(7, 7)
Info
All Exons
Exon 1.3a (F:58-68)
Exon 1.4a (F:68-183)
Exon 2.1b (R:29-49)
Exon 2.2a (R:49-90)
Exon 2.2e (R:90-124)
Exon 2.3 (R:124-146)
Exon 2.4b (R:146-168)
View:
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All Exon Boundaries
1: Boundary 1.1/1.3a
2: Boundary 1.3a/1.4a
3: Boundary 1.4a/-
4: Boundary -/2.1b
5: Boundary 2.1b/2.2a
6: Boundary 2.2a/2.2e
7: Boundary 2.2e/2.3
8: Boundary 2.3/2.4b
9: Boundary 2.4b/2.5a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000281834
1
ENSE00000814645
chr1:
173176452-173176163
290
TNFL4_HUMAN
1-51
51
0
-
-
1.3a
ENST00000281834
3a
ENSE00000789877
chr1:
173157708-173157660
49
TNFL4_HUMAN
52-68
17
1
F:58-68
11
1.4a
ENST00000281834
4a
ENSE00001003107
chr1:
173156004-173152874
3131
TNFL4_HUMAN
68-183
116
1
F:68-183
116
2.1b
ENST00000379236
1b
ENSE00001832731
chr1:
1149512-1149363
150
TNR4_HUMAN
1-49
49
1
R:29-49
21
2.2a
ENST00000379236
2a
ENSE00001333068
chr1:
1149165-1149043
123
TNR4_HUMAN
49-90
42
1
R:49-90
42
2.2e
ENST00000379236
2e
ENSE00001333064
chr1:
1148473-1148372
102
TNR4_HUMAN
90-124
35
1
R:90-124
35
2.3
ENST00000379236
3
ENSE00001333060
chr1:
1148084-1148018
67
TNR4_HUMAN
124-146
23
1
R:124-146
23
2.4b
ENST00000379236
4b
ENSE00001545401
chr1:
1147518-1147322
197
TNR4_HUMAN
146-212
67
1
R:146-168
23
2.5a
ENST00000379236
5a
ENSE00001333051
chr1:
1147212-1147084
129
TNR4_HUMAN
212-255
44
0
-
-
2.5d
ENST00000379236
5d
ENSE00001915458
chr1:
1147005-1146706
300
TNR4_HUMAN
255-277
23
0
-
-
[
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SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2hevf1 (F:58-183)
2a: SCOP_d2hevr1 (R:83-142)
2b: SCOP_d2hevr2 (R:143-168)
2c: SCOP_d2hevr3 (R:29-82)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
TNF-like
(100)
Superfamily
:
TNF-like
(100)
Family
:
TNF-like
(82)
Protein domain
:
Tumor necrosis factor ligand superfamily member 4, OX40L
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2hevf1
F:58-183
Class
:
Small proteins
(3458)
Fold
:
TNF receptor-like
(25)
Superfamily
:
TNF receptor-like
(25)
Family
:
TNF receptor-like
(16)
Protein domain
:
Tumor necrosis factor receptor superfamily member 4, OX40L receptor
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
2a
d2hevr1
R:83-142
2b
d2hevr2
R:143-168
2c
d2hevr3
R:29-82
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Asymmetric Unit 1
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Asym.Unit (52 KB)
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