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2HCB
Asym. Unit
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Asym.Unit (223 KB)
Biol.Unit 1 (215 KB)
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(1)
Title
:
STRUCTURE OF AMPPCP-BOUND DNAA FROM AQUIFEX AEOLICUS
Authors
:
J. P. Erzberger, M. L. Mott, J. M. Berger
Date
:
15 Jun 06 (Deposition) - 25 Jul 06 (Release) - 15 Feb 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.51
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Aaa+ Atpase, Helix-Turn-Helix, Replication
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
J. P. Erzberger, M. L. Mott, J. M. Berger
Structural Basis For Atp-Dependent Dnaa Assembly And Replication-Origin Remodeling.
Nat. Struct. Mol. Biol. V. 13 676 2006
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
1b: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPb)
1c: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPc)
1d: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPd)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
4
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
2
MG
4
Ligand/Ion
MAGNESIUM ION
[
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:126 , ASP A:180 , ASP A:181 , ACP A:700
BINDING SITE FOR RESIDUE MG A 400
2
AC2
SOFTWARE
THR B:126 , ASP B:181 , ACP B:700
BINDING SITE FOR RESIDUE MG B 401
3
AC3
SOFTWARE
LYS C:125 , THR C:126 , ASP C:181 , ACP C:700
BINDING SITE FOR RESIDUE MG C 402
4
AC4
SOFTWARE
LYS D:125 , THR D:126 , ASP D:180 , ASP D:181 , ACP D:700
BINDING SITE FOR RESIDUE MG D 403
5
AC5
SOFTWARE
TYR A:83 , PHE A:88 , ILE A:89 , ASN A:94 , VAL A:121 , GLY A:122 , THR A:123 , GLY A:124 , LYS A:125 , THR A:126 , HIS A:127 , ASP A:181 , VAL A:276 , ARG A:277 , GLU A:280 , MG A:400 , ARG D:230
BINDING SITE FOR RESIDUE ACP A 700
6
AC6
SOFTWARE
ARG A:230 , TYR B:83 , ASN B:87 , PHE B:88 , ILE B:89 , ASN B:94 , VAL B:121 , GLY B:122 , THR B:123 , GLY B:124 , LYS B:125 , THR B:126 , HIS B:127 , ASP B:181 , LYS B:253 , VAL B:276 , ARG B:277 , GLU B:280 , MG B:401
BINDING SITE FOR RESIDUE ACP B 700
7
AC7
SOFTWARE
ARG B:230 , ASN C:87 , PHE C:88 , ILE C:89 , ASN C:94 , VAL C:121 , GLY C:122 , THR C:123 , GLY C:124 , LYS C:125 , THR C:126 , HIS C:127 , ASP C:181 , LYS C:253 , VAL C:276 , ARG C:277 , GLU C:280 , MG C:402
BINDING SITE FOR RESIDUE ACP C 700
8
AC8
SOFTWARE
ARG C:230 , PHE D:88 , ILE D:89 , ASN D:94 , VAL D:121 , GLY D:122 , THR D:123 , GLY D:124 , LYS D:125 , THR D:126 , HIS D:127 , ASP D:181 , LYS D:253 , VAL D:276 , ARG D:277 , GLU D:280 , MG D:403
BINDING SITE FOR RESIDUE ACP D 700
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: DNAA (A:354-373,B:354-373,C:354-373,D:35...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DNAA
PS01008
DnaA protein signature.
DNAA_AQUAE
354-373
4
A:354-373
B:354-373
C:354-373
D:354-373
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2hcba1 (A:290-399)
1b: SCOP_d2hcbb1 (B:290-399)
1c: SCOP_d2hcbc1 (C:290-399)
1d: SCOP_d2hcbd1 (D:290-399)
2a: SCOP_d2hcba2 (A:77-289)
2b: SCOP_d2hcbb2 (B:77-289)
2c: SCOP_d2hcbc2 (C:77-289)
2d: SCOP_d2hcbd2 (D:77-289)
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Classes
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)
(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
TrpR-like
(20)
Family
:
Chromosomal replication initiation factor DnaA C-terminal domain IV
(3)
Protein domain
:
Chromosomal replication initiation factor DnaA C-terminal domain IV
(3)
Aquifex aeolicus [TaxId: 63363]
(2)
1a
d2hcba1
A:290-399
1b
d2hcbb1
B:290-399
1c
d2hcbc1
C:290-399
1d
d2hcbd1
D:290-399
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
Extended AAA-ATPase domain
(92)
Protein domain
:
Chromosomal replication initiation factor DnaA
(2)
Aquifex aeolicus [TaxId: 63363]
(2)
2a
d2hcba2
A:77-289
2b
d2hcbb2
B:77-289
2c
d2hcbc2
C:77-289
2d
d2hcbd2
D:77-289
[
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CATH Domains
(3, 12)
Info
all CATH domains
1a: CATH_2hcbA01 (A:77-243)
1b: CATH_2hcbB01 (B:77-243)
1c: CATH_2hcbC01 (C:77-243)
1d: CATH_2hcbD01 (D:77-243)
2a: CATH_2hcbA03 (A:291-399)
2b: CATH_2hcbC03 (C:291-399)
2c: CATH_2hcbB03 (B:291-399)
2d: CATH_2hcbD03 (D:291-399)
3a: CATH_2hcbA02 (A:244-290)
3b: CATH_2hcbB02 (B:244-290)
3c: CATH_2hcbC02 (C:244-290)
3d: CATH_2hcbD02 (D:244-290)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Aquifex aeolicus. Organism_taxid: 63363.
(7)
1a
2hcbA01
A:77-243
1b
2hcbB01
B:77-243
1c
2hcbC01
C:77-243
1d
2hcbD01
D:77-243
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Chromosomal Replication Initiator Protein Dnaa; Chain: A;
(3)
Homologous Superfamily
:
[code=1.10.1750.10, no name defined]
(3)
Aquifex aeolicus. Organism_taxid: 63363.
(2)
2a
2hcbA03
A:291-399
2b
2hcbC03
C:291-399
2c
2hcbB03
B:291-399
2d
2hcbD03
D:291-399
Topology
:
Helicase, Ruva Protein; domain 3
(218)
Homologous Superfamily
:
[code=1.10.8.60, no name defined]
(73)
Aquifex aeolicus. Organism_taxid: 63363.
(5)
3a
2hcbA02
A:244-290
3b
2hcbB02
B:244-290
3c
2hcbC02
C:244-290
3d
2hcbD02
D:244-290
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Chain D
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