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2H63
Asym. Unit
Info
Asym.Unit (180 KB)
Biol.Unit 1 (88 KB)
Biol.Unit 2 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN BILIVERDIN REDUCTASE A (CASP TARGET)
Authors
:
K. Kavanagh, J. Elkins, E. Ugochukwu, K. Guo, E. Pilka, P. Lukacik, C. Smee, E. Papagrigoriou, G. Bunkoczi, M. Sundstrom, C. Arrowsmith, J. Weigelt, A. Edwards, F. Von Delft, U. Oppermann, Structural Genomics Consortium (Sgc)
Date
:
30 May 06 (Deposition) - 04 Jul 06 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Oxidoreductase, Biliverdin Reductase, Blvra, Structural Genomics, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kavanagh, J. Elkins, E. Ugochukwu, K. Guo, E. Pilka, P. Lukacik, C. Smee, E. Papagrigoriou, U. Oppermann
Crystal Structure Of Human Biliverdin Reductase A
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
1b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
1c: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPc)
1d: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAP
4
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:15 , VAL A:16 , GLY A:17 , ARG A:18 , ALA A:19 , SER A:44 , ARG A:45 , ARG A:46 , CYS A:74 , SER A:75 , SER A:77 , HIS A:80 , GLU A:97 , TYR A:98 , PHE A:162 , SER D:235
BINDING SITE FOR RESIDUE NAP A 501
2
AC2
SOFTWARE
GLY B:15 , VAL B:16 , GLY B:17 , ARG B:18 , ALA B:19 , SER B:44 , ARG B:45 , ARG B:46 , CYS B:74 , SER B:75 , SER B:77 , HIS B:80 , GLU B:97 , TYR B:98 , PHE B:162 , PHE B:251
BINDING SITE FOR RESIDUE NAP B 501
3
AC3
SOFTWARE
GLY C:15 , VAL C:16 , GLY C:17 , ARG C:18 , ALA C:19 , SER C:44 , ARG C:45 , ARG C:46 , CYS C:74 , SER C:75 , SER C:77 , HIS C:80 , GLU C:97 , TYR C:98 , GLU C:124
BINDING SITE FOR RESIDUE NAP C 501
4
AC4
SOFTWARE
ARG A:7 , SER C:235 , GLY D:15 , VAL D:16 , GLY D:17 , ARG D:18 , ALA D:19 , SER D:44 , ARG D:45 , ARG D:46 , CYS D:74 , SER D:75 , SER D:77 , HIS D:80 , GLU D:97 , TYR D:98 , GLU D:124 , PHE D:162 , HOH D:507
BINDING SITE FOR RESIDUE NAP D 501
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SAPs(SNPs)/Variants
(2, 8)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_019231 (L37V, chain A/B/C/D, )
2: VAR_014851 (Q56R, chain A/B/C/D, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_019231
L
37
V
BIEA_HUMAN
Polymorphism
17245918
A/B/C/D
L
37
V
2
UniProt
VAR_014851
Q
56
R
BIEA_HUMAN
Polymorphism
1050916
A/B/C/D
Q
56
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(6, 24)
Info
All Exons
Exon 1.5 (A:6-45 | B:7-45 | C:7-45 | D:6-45)
Exon 1.6a (A:45-85 | B:45-85 | C:45-85 | D:45...)
Exon 1.7b (A:85-118 | B:85-118 | C:85-118 | D...)
Exon 1.8b (A:118-154 | B:118-154 | C:118-154 ...)
Exon 1.9b (A:154-211 (gaps) | B:154-211 (gaps...)
Exon 1.10a (A:211-291 | B:211-291 | C:211-291 ...)
View:
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All Exon Boundaries
1: Boundary 1.4b/1.5
2: Boundary 1.5/1.6a
3: Boundary 1.6a/1.7b
4: Boundary 1.7b/1.8b
5: Boundary 1.8b/1.9b
6: Boundary 1.9b/1.10a
7: Boundary 1.10a/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000265523
1a
ENSE00001086664
chr7:
43798279-43798333
55
BIEA_HUMAN
-
0
0
-
-
1.4b
ENST00000265523
4b
ENSE00001086670
chr7:
43810737-43810769
33
BIEA_HUMAN
1-4
4
0
-
-
1.5
ENST00000265523
5
ENSE00000832518
chr7:
43827503-43827624
122
BIEA_HUMAN
5-45
41
4
A:6-45
B:7-45
C:7-45
D:6-45
40
39
39
40
1.6a
ENST00000265523
6a
ENSE00000680543
chr7:
43830848-43830967
120
BIEA_HUMAN
45-85
41
4
A:45-85
B:45-85
C:45-85
D:45-85
41
41
41
41
1.7b
ENST00000265523
7b
ENSE00000680545
chr7:
43832314-43832411
98
BIEA_HUMAN
85-118
34
4
A:85-118
B:85-118
C:85-118
D:85-118
34
34
34
34
1.8b
ENST00000265523
8b
ENSE00000680547
chr7:
43840064-43840171
108
BIEA_HUMAN
118-154
37
4
A:118-154
B:118-154
C:118-154
D:118-154
37
37
37
37
1.9b
ENST00000265523
9b
ENSE00000680549
chr7:
43843275-43843446
172
BIEA_HUMAN
154-211
58
4
A:154-211 (gaps)
B:154-211 (gaps)
C:154-211 (gaps)
D:154-211 (gaps)
58
58
58
58
1.10a
ENST00000265523
10a
ENSE00000832519
chr7:
43846576-43846938
363
BIEA_HUMAN
211-296
86
4
A:211-291
B:211-291
C:211-291
D:211-294
81
81
81
84
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2h63D02 (D:125-245,D:267-294)
1b: CATH_2h63A02 (A:125-245,A:267-291)
1c: CATH_2h63C02 (C:125-245,C:267-291)
1d: CATH_2h63B02 (B:125-245,B:267-291)
2a: CATH_2h63A01 (A:6-124,A:246-266)
2b: CATH_2h63D01 (D:6-124,D:246-266)
2c: CATH_2h63B01 (B:7-124,B:246-266)
2d: CATH_2h63C01 (C:7-124,C:246-266)
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Classes
(
)
(
)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Dihydrodipicolinate Reductase; domain 2
(182)
Homologous Superfamily
:
Dihydrodipicolinate Reductase; domain 2
(178)
Human (Homo sapiens)
(8)
1a
2h63D02
D:125-245,D:267-294
1b
2h63A02
A:125-245,A:267-291
1c
2h63C02
C:125-245,C:267-291
1d
2h63B02
B:125-245,B:267-291
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Human (Homo sapiens)
(188)
2a
2h63A01
A:6-124,A:246-266
2b
2h63D01
D:6-124,D:246-266
2c
2h63B01
B:7-124,B:246-266
2d
2h63C01
C:7-124,C:246-266
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Pfam Domains
(0, 0)
Info
all PFAM domains
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