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2H28
Asym. Unit
Info
Asym.Unit (43 KB)
Biol.Unit 1 (21 KB)
Biol.Unit 2 (20 KB)
Biol.Unit 3 (38 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF YEEU FROM E. COLI. NORTHEAST STRUCTURAL GENOMICS TARGET ER304
Authors
:
M. Arbing, M. Su, J. Benach, N. K. Karpowich, M. Jiang, R. Xiao, K. Cunnin C. Ma, C. X. Chen, T. B. Acton, G. T. Montelione, L. Tong, J. F. Hunt, Nort Structural Genomics Consortium (Nesg)
Date
:
18 May 06 (Deposition) - 18 Jul 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (1x)
Keywords
:
Er304, E. Coli, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Arbing, S. K. Handelman, A. P. Kuzin, G. Verdon, C. Wang, M. Su, F. P. Rothenbacher, M. Abashidze, M. Liu, J. M. Hurley, R. Xiao, T. Acton, M. Inouye, G. T. Montelione, N. A. Woychik, J. F. Hunt
Crystal Structures Of Phd-Doc, Higa, And Yeeu Establish Multiple Evolutionary Links Between Microbial Growth-Regulating Toxin-Antitoxin Systems.
Structure V. 18 996 2010
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SELENOMETHIONINE (MSEa)
4b: SELENOMETHIONINE (MSEb)
4c: SELENOMETHIONINE (MSEc)
4d: SELENOMETHIONINE (MSEd)
4e: SELENOMETHIONINE (MSEe)
View:
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No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
GOL
2
Ligand/Ion
GLYCEROL
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
MSE
5
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:23 , CYS A:24 , ARG A:51 , CYS B:24 , ARG B:51
BINDING SITE FOR RESIDUE CL A 4001
2
AC2
SOFTWARE
HIS A:86 , HIS A:88 , ASP A:102 , THR A:103
BINDING SITE FOR RESIDUE MG A 5001
3
AC3
SOFTWARE
ARG A:51 , HOH A:3014 , TRP B:19 , GLY B:21
BINDING SITE FOR RESIDUE MG B 5002
4
AC4
SOFTWARE
THR A:25 , PRO B:23 , CYS B:24 , THR B:25 , VAL B:26 , TYR B:115
BINDING SITE FOR RESIDUE GOL B 6000
5
AC5
SOFTWARE
TRP A:19 , TRP A:20 , GLY A:21 , LEU A:104 , TRP B:19 , ARG B:51
BINDING SITE FOR RESIDUE GOL B 6001
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2h28a1 (A:16-122)
1b: SCOP_d2h28b_ (B:)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Profilin-like
(304)
Superfamily
:
YeeU-like
(4)
Family
:
YagB/YeeU/YfjZ-like
(4)
Protein domain
:
Hypothetical protein YeeU
(2)
Escherichia coli [TaxId: 562]
(1)
1a
d2h28a1
A:16-122
1b
d2h28b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2h28A01 (A:27-118)
1b: CATH_2h28B01 (B:27-118)
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)
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)
Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta-Lactamase
(202)
Homologous Superfamily
:
[code=3.30.450.20, no name defined]
(117)
Escherichia coli. Organism_taxid: 562. Strain: k12 mg1655.
(1)
1a
2h28A01
A:27-118
1b
2h28B01
B:27-118
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (43 KB)
Header - Asym.Unit
Biol.Unit 1 (21 KB)
Header - Biol.Unit 1
Biol.Unit 2 (20 KB)
Header - Biol.Unit 2
Biol.Unit 3 (38 KB)
Header - Biol.Unit 3
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